Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F12
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical ...    66   3e-11
AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z78061-3|CAB60286.1|  662|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AL117200-16|CAB60587.1|  662|Caenorhabditis elegans Hypothetical...    29   6.0  

>AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical
           protein CD4.3 protein.
          Length = 186

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 36/98 (36%), Positives = 58/98 (59%)
 Frame = +1

Query: 331 RFKSDLYEPDYLISLQPDEPVYDCLNLQLKGYDYAILEACQSQIHRYAEVMGLQVEDCWA 510
           R  S LYEP +  S +   P Y+ +N++++G+D+  LE  Q+ IH+ A+  G  V D +A
Sbjct: 29  RDASLLYEPKFQDSRE--FPEYNTINVRIQGHDFGSLEKYQAYIHKTAKRFGFTVVDSYA 86

Query: 511 TPAQQLKVQRFKPGSTALDAEYQLNIYERNVQVVDVPA 624
             AQ  K   +KP ST  ++E  ++ Y+R V++ DV A
Sbjct: 87  VAAQTQKAITYKPYSTVSESEIDMSTYDRVVRLSDVAA 124



 Score = 31.9 bits (69), Expect = 0.64
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 659 ALLPEGCTLNVHEHTPEHEEIRYVPDNQLIDLKQQLEGM 775
           A +P G T+ V EH    E+ RY+PD  L   +++L+ +
Sbjct: 136 AHIPIGVTMTVKEHEKVDEDSRYIPDLLLKQKQEELKAL 174


>AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical
           protein Y54G2A.52 protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 265 NFLSNFLNYFEACLNTCSLK 206
           N  SNF+ YFE C N C L+
Sbjct: 46  NCPSNFIYYFECCANECCLR 65


>Z78061-3|CAB60286.1|  662|Caenorhabditis elegans Hypothetical
           protein C48G7.3 protein.
          Length = 662

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 623 HGLWVLCFGYQGALLPEGCTLNVHE 697
           HGL+++  G++  L P  C + VHE
Sbjct: 610 HGLYLIAEGFESCLSPSECPVLVHE 634


>AL117200-16|CAB60587.1|  662|Caenorhabditis elegans Hypothetical
           protein C48G7.3 protein.
          Length = 662

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 623 HGLWVLCFGYQGALLPEGCTLNVHE 697
           HGL+++  G++  L P  C + VHE
Sbjct: 610 HGLYLIAEGFESCLSPSECPVLVHE 634


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,169,361
Number of Sequences: 27780
Number of extensions: 340044
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)