Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F07
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.6  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   3.4  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 300 PKSPS-SFCPKVPKTLPPPICLSQVTS 223
           P SP  SF  +VP  +PPP+C   V S
Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVS 191


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 309 PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGWR 211
           P+ P  PS+  P  PK  PPP+  + V +   R
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = -2

Query: 345 LPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGWRLEDCPL--IRXSFRX 172
           +P++  ++SL   A  + PSS  P    ++P     S VTS    L + PL   +   R 
Sbjct: 1   MPKAKKRVSLASKASSRLPSSGKPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRK 60

Query: 171 XRRXXNXLRXTHTRVXAKRRKQ 106
            R      + ++ ++ A  RK+
Sbjct: 61  DRHFNWQQKFSNPKISASARKR 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,199
Number of Sequences: 5004
Number of extensions: 42170
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)