Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F07
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    30   2.4  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    30   2.4  
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
           protein 3, isoform b protein.
          Length = 1361

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 515 IWIKTPLFCRWXGSKEFGPKNKIXFQPK 598
           IWI TP+ C W G+K  GP   +   P+
Sbjct: 263 IWI-TPIDCYWDGAKPLGPNPPLNLGPE 289


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
           protein 3, isoform a protein.
          Length = 1358

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 515 IWIKTPLFCRWXGSKEFGPKNKIXFQPK 598
           IWI TP+ C W G+K  GP   +   P+
Sbjct: 263 IWI-TPIDCYWDGAKPLGPNPPLNLGPE 289


>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 515 IWIKTPLFCRWXGSKEFGP 571
           IWI TP+ C W GSK  GP
Sbjct: 280 IWI-TPIDCFWEGSKALGP 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,199
Number of Sequences: 27780
Number of extensions: 255564
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)