Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F06
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666...    29   5.1  
10_02_0002 - 4018145-4018545,4018563-4018605                           29   6.7  
04_01_0080 - 889548-889892                                             28   8.8  

>02_04_0343 -
           22166148-22166318,22166422-22166465,22166563-22166626,
           22166729-22167109,22167296-22167475,22167661-22167790,
           22167844-22167946,22168060-22168093,22168216-22168300,
           22168389-22168453,22168592-22168690,22168960-22169025,
           22169200-22169439
          Length = 553

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 314 RTLGRSQKHCGTSHGPTWSTKFV 246
           R LG +++HC T  GP WS   V
Sbjct: 147 RHLGDTKEHCSTYTGPRWSAAMV 169


>10_02_0002 - 4018145-4018545,4018563-4018605
          Length = 147

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 200 VLPSNGRAGL*ASRSPRISLTTWAHATYHSASATGLMSGTRKLANVYRN 346
           +LP NG + L A  +     + WA A+   A+A G   G R+   +++N
Sbjct: 41  LLPGNGCSQLDAELTEHYEPSPWAPASCGGAAAAGKGKGRRRWFRLWKN 89


>04_01_0080 - 889548-889892
          Length = 114

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = -2

Query: 376 IDLHNFINIQIPVHICQFSC 317
           +D+H+++N+ + + +C+F C
Sbjct: 84  VDIHDYLNLALHMQLCRFGC 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,480,738
Number of Sequences: 37544
Number of extensions: 324677
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)