Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F04
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0496 + 3939731-3939758,3940459-3942773                           32   0.71 
06_03_0548 + 22004338-22006746                                         31   1.6  
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    29   3.8  

>12_01_0496 + 3939731-3939758,3940459-3942773
          Length = 780

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 280 WQV*MRAPT-QAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITATIR 128
           WQ+   A   +A L+  G+  V  QG S+ W    HP + +L  + +TAT +
Sbjct: 101 WQISSSAEAVRAELMDSGNLVVKDQGGSILWQSFDHPTNTLLPMQPVTATAK 152


>06_03_0548 + 22004338-22006746
          Length = 802

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -3

Query: 253 QAVLVRYGSSQVLTQGSSVQWAFSGHPYSVVLASRAITATIR--NTDKVLFGGHLRDIFQ 80
           QA L+  G+  V ++G ++ W     P   +L ++ ITA I+  +T+++L  G     F 
Sbjct: 124 QAKLLNTGNLIVKSKGDTILWESFAFPTDTLLPTQNITARIKLISTNRLLAPGRFSFHFD 183

Query: 79  D-YKLS 65
           D Y LS
Sbjct: 184 DQYLLS 189


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 236 VRVVAGPHAGVISPMGIFRASIFGSAGLESH 144
           +R + GP+ G+     +FR SIFG AG ES+
Sbjct: 247 MRRMFGPNGGIGIAEMLFRTSIFGLAGAESN 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,116,242
Number of Sequences: 37544
Number of extensions: 254896
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)