Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F04
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    31   0.019
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    31   0.019
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 30.7 bits (66), Expect = 0.019
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 177 CPENAHWT--DDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 338
           CP N  ++  D  C R C +  +    C+      C C  G + N  + CVP S C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 30.7 bits (66), Expect = 0.019
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 177 CPENAHWT--DDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 338
           CP N  ++  D  C R C +  +    C+      C C  G + N  + CVP S C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 96  RWPPNNTLSVF 128
           R PPNN LSVF
Sbjct: 158 RQPPNNWLSVF 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,698
Number of Sequences: 438
Number of extensions: 2190
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)