Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F03
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.6  
06_03_0218 + 18219956-18220555                                         29   6.7  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.7  
03_04_0061 - 16949038-16950006                                         28   8.8  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 575 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 733
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = -1

Query: 855 NGGXGHTAQXGANDLHRXEIPTA*XMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 676
           NGG     +  A    +   P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 675 LVS 667
             S
Sbjct: 137 RAS 139


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 407 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 562
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 657 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 773
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,108,398
Number of Sequences: 37544
Number of extensions: 442858
Number of successful extensions: 1293
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)