Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_F02
(923 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 89 3e-18
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 84 1e-16
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 81 1e-15
01_06_0602 + 30526867-30527358 38 0.015
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 33 0.24
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 33 0.24
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 3.9
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 29 3.9
11_06_0252 - 21713955-21714473 29 5.2
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 28 9.1
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 28 9.1
01_06_0720 - 31482732-31482738,31482984-31483027,31483073-31483300 28 9.1
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 89.4 bits (212), Expect = 3e-18
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Frame = +2
Query: 359 GYRCETHSLISQ-GYVLNIHRIPQARS-----GGDTPSNTVILQHGLFASSADWVLNGPG 520
GY CE H++ ++ GY+L++ RIP R GG V+LQHGL W++N P
Sbjct: 63 GYACEEHTVTTEDGYILSLQRIPSGRGETAAGGGGGGKVPVLLQHGLMMDGVTWLMNSPN 122
Query: 521 KSLAFVLADAGYDVWMPNIRGNRYSXEHTTFXEQFDSIL 637
+SL ++LAD GYDVW+ N RG YS HT+ DS++
Sbjct: 123 ESLGYILADNGYDVWIANSRGTVYSRHHTSLVSS-DSVI 160
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 84.2 bits (199), Expect = 1e-16
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Frame = +2
Query: 359 GYRCETHSLISQ-GYVLNIHRIPQARSGGDTPSNT------VILQHGLFASSADWVLNGP 517
GY CE H + +Q GY+L + RIP+ R GG T V+LQHG+ W+L P
Sbjct: 57 GYPCEEHEVTTQDGYILGLQRIPRGRIGGVTGGGAAAARQPVLLQHGVLVDGMTWLLGSP 116
Query: 518 GKSLAFVLADAGYDVWMPNIRGNRYSXEHTT 610
+SL ++LAD G+DVW+ N RG R+S H +
Sbjct: 117 EESLPYILADQGFDVWIANNRGTRWSSRHVS 147
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 81.0 bits (191), Expect = 1e-15
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +2
Query: 359 GYRCETHSLISQ-GYVLNIHRIPQARS-GGDTPSNTVILQHGLFASSADWVLNGPGKSLA 532
GY C H++ ++ G++L++ IP ++ D+ V LQHGLF W +N +SL
Sbjct: 55 GYPCTEHNVETKDGFLLSLQHIPHGKNKAADSTGPPVFLQHGLFQGGDTWFINSAEQSLG 114
Query: 533 FVLADAGYDVWMPNIRGNRYSXEHTTF 613
++LAD G+DVW+ N+RG R+S H+TF
Sbjct: 115 YILADNGFDVWIGNVRGTRWSKGHSTF 141
>01_06_0602 + 30526867-30527358
Length = 163
Score = 37.5 bits (83), Expect = 0.015
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 77 NEDARVLSYFGGTSACLRSKGLICSEAREASXNNFEDARNYIETQKDKVIEEWSSYMEDI 256
N + SY+ RS GL C+ R+A E +E K++ IEEW++ E++
Sbjct: 49 NSQTKANSYWRRHKQIRRSFGL-CTHRRQAGEGEEEKMGGGMEVHKNRWIEEWNAGRENL 107
Query: 257 KLSSSWT 277
+ + WT
Sbjct: 108 EFNFRWT 114
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 33.5 bits (73), Expect = 0.24
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 260 LSSSWTNFLEDKENPSLEDPDVVLSVPAMITRRGYRCETHS 382
L+S W N+ K+NP +D D+ L V A+ R +RC S
Sbjct: 10 LTSLWGNYSIPKDNPYTDDSDLELEVWALGLRNPWRCSFDS 50
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 33.5 bits (73), Expect = 0.24
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 200 IETQKDKVIEEWSSYMEDIKLSSS-WTNFLEDKENPSLEDPDVVLSVPAMITRRGYRCET 376
I ++ + + E ++ ++ +KL ++ W N+ K+NP +D D+ L V A+ R +RC
Sbjct: 214 ILSKYEDMSELYAESLDRVKLLTNLWGNYSIPKDNPYTDDSDLELEVWALGLRNPWRCSF 273
Query: 377 HS 382
S
Sbjct: 274 DS 275
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 251 DIKLSSSWTNFLEDKENPSLEDPDVVLSVPAMITRRGYRCETHS 382
+I S W N+ K+NP +D D+ V A+ R +RC S
Sbjct: 429 EIANQSLWGNYSIPKDNPYTDDSDLEPEVWALGLRNPWRCSFDS 472
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 225 MTLSFCVSM*LRASSKLLXEASRASEQIKPLDRRHALVPPK*LRTRASSFSY 70
+T+ S LR +L S+ + +D H V K LRT+ SFSY
Sbjct: 296 LTIDGIRSQVLRLQDRLSKVRSKQENMVSLVDHAHIKVSEKRLRTQKRSFSY 347
>11_06_0252 - 21713955-21714473
Length = 172
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 509 NGPGKSLAFVLADAGYDVWMPNIR 580
+G G FVLADA D W+P +R
Sbjct: 135 DGAGGRAGFVLADAEDDRWLPEVR 158
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 515 ARSGPSRQSSQTSRAEVSRYSMECRRRFEP 426
A S PS SS +S S SM C+RR P
Sbjct: 16 ASSSPSSPSSSSSEDSSSPMSMPCKRRARP 45
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 515 ARSGPSRQSSQTSRAEVSRYSMECRRRFEP 426
A S PS SS +S S SM C+RR P
Sbjct: 16 ASSSPSSPSSSSSEDSSSPMSMPCKRRARP 45
>01_06_0720 - 31482732-31482738,31482984-31483027,31483073-31483300
Length = 92
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 200 IETQKDKVIEEWSSYMEDIKLSSSWT 277
+E K+K IEEW++ E+++ + WT
Sbjct: 5 MEVHKNKWIEEWNAGRENLEFNFRWT 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,754,250
Number of Sequences: 37544
Number of extensions: 406989
Number of successful extensions: 925
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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