Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F02
         (923 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    33   0.016
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    24   5.7  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   5.7  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   7.5  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 32.7 bits (71), Expect = 0.016
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 152  EAREASXNNFEDARNYIETQKDKVIEEWSSYMEDIKLSSSWT 277
            EA  A+  N EDAR   +T +DK  EE S   E+IK  ++ T
Sbjct: 1424 EALYAASRNAEDARKNAQTAQDKYAEEASKLAENIKKRANAT 1465


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 336 CPR*SRGAATAVRPTRSSPR 395
           CPR  R  A   R T SSPR
Sbjct: 36  CPRTRRSEAVMTRSTPSSPR 55


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 protein.
          Length = 961

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = +1

Query: 316  PRRGAERARDDHAARLPL*DPLAHLPGIRVKHSQDTAGSKRRRHSI----EYRDTSARLV 483
            P+  A R    H +R    +  +HL   +VK  Q         HS+    +Y   S +L+
Sbjct: 835  PKHHASRGAKPHRSRCEATEARSHLADSQVKKEQQITSQALPPHSMHTDCDYEPESHKLL 894

Query: 484  CE 489
             E
Sbjct: 895  AE 896


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 534 SCWRTPATTSGCQT*EVTDIRGSTPLXXSSST 629
           SCW  P    GC++  V++ RG T    ++ T
Sbjct: 528 SCWLFPVHKKGCRS-IVSNYRGITQTCATAKT 558


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,371
Number of Sequences: 2352
Number of extensions: 15004
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100468593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)