Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_E21
         (899 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        32   3.3  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        32   3.3  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       32   3.3  
AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.           31   4.3  
AK126743-1|BAC86667.1|  253|Homo sapiens protein ( Homo sapiens ...    30   10.0 

>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 358 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 230
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 358 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 230
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 358 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 230
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.
          Length = 326

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 302 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 388
           + R PV T+P+   L AF   GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189


>AK126743-1|BAC86667.1|  253|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44789 fis, clone BRACE3038760. ).
          Length = 253

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = -2

Query: 592 LCSTAYIPRSANPVTSGCCQWR*VVSYRVGLKTIVTG*GAAVGLNGGFVH-TAQLGANDL 416
           +CS+   P ++ P   G   WR ++++R    T V   GA +GL GG    T  LG   +
Sbjct: 118 VCSSCP-PWASLPAAPGARPWRRLLAHRAARGTRVGSLGARLGLRGGAASWTGTLGG--I 174

Query: 415 HRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEG 299
              E+     +R+ H   R +  Q  G   G  R   EG
Sbjct: 175 PFPELRALGWVRRPHTITRPR--QPWGAWAGAGRAVWEG 211


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,189,060
Number of Sequences: 237096
Number of extensions: 3104523
Number of successful extensions: 12033
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12029
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)