Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_E21
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.64 
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    30   2.0  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    30   2.0  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    30   2.0  
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    30   2.6  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    30   2.6  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    30   2.6  
U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 267 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 389
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 135 SHVLSCVIXLILWITVLPPLSELIPLAASXIL 40
           S +LS V+ L+L   +LPP S  IPL A  +L
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 135 SHVLSCVIXLILWITVLPPLSELIPLAASXIL 40
           S +LS V+ L+L   +LPP S  IPL A  +L
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 135 SHVLSCVIXLILWITVLPPLSELIPLAASXIL 40
           S +LS V+ L+L   +LPP S  IPL A  +L
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMAKYLL 298


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = -1

Query: 488 YRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQES 309
           +R RR     +    H  AW+ R  P    ++ +  K  ++ K E + G     G+E+  
Sbjct: 81  FRYRRMVFGAKDQLKHDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQ 140

Query: 308 ARGSFQGETPGIF 270
                +G+T   F
Sbjct: 141 NYSKRRGQTRNSF 153


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 129 VLSCVIXLILWITVLPPLSELIPLAASXIL 40
           +LS V+ L+L   +LPP S  IPL A  +L
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVAKYLL 306


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 129 VLSCVIXLILWITVLPPLSELIPLAASXIL 40
           +LS V+ L+L   +LPP S  IPL A  +L
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVAKYLL 306


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 129 VLSCVIXLILWITVLPPLSELIPLAASXIL 40
           +LS V+ L+L   +LPP S  IPL A  +L
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVAKYLL 306


>U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical
           protein C30B5.5 protein.
          Length = 790

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 59  SGISSLKGGNTV-IHRIRXITQE-RTCEQKASKRPGTVKRPRCWRFSI 196
           S I +L+ G+T  I  ++ +T   R C+       GTV +PRC  FSI
Sbjct: 455 SPIHALRNGSTPKIDTLQDLTSNGRPCKTSIIDDNGTVGKPRCNAFSI 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,213,779
Number of Sequences: 27780
Number of extensions: 445384
Number of successful extensions: 1168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)