Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_E17
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                        112   4e-25
03_04_0027 + 16593133-16593573                                        108   7e-24
02_01_0563 + 4134954-4135388                                          106   3e-23
12_02_0407 - 18654134-18654172,18654913-18655803                       29   6.8  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score =  112 bits (269), Expect = 4e-25
 Identities = 56/148 (37%), Positives = 78/148 (52%)
 Frame = +3

Query: 78  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M TS +K RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 258 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 437
           FH  +NK + P +N+++LW++V  +   + A A  GK P++++ +            P++
Sbjct: 61  FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118

Query: 438 PVIVXXXXXXXXXXXXXXDVGGACVLSA 521
           P++V                GGA VL+A
Sbjct: 119 PIVVKAKLISKVAEKKIKAAGGAVVLTA 146


>03_04_0027 + 16593133-16593573
          Length = 146

 Score =  108 bits (259), Expect = 7e-24
 Identities = 58/149 (38%), Positives = 75/149 (50%), Gaps = 1/149 (0%)
 Frame = +3

Query: 78  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 258 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPK 434
           FH   N+  CP +N+++LW++V      K A A  GK PVI++ +             P+
Sbjct: 61  FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117

Query: 435 QPVIVXXXXXXXXXXXXXXDVGGACVLSA 521
           +P++V                GGA +L+A
Sbjct: 118 RPIVVKAKLISKVAEKKIKAAGGAVLLTA 146


>02_01_0563 + 4134954-4135388
          Length = 144

 Score =  106 bits (254), Expect = 3e-23
 Identities = 57/149 (38%), Positives = 75/149 (50%), Gaps = 1/149 (0%)
 Frame = +3

Query: 78  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 258 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPK 434
           FH   N+  CP +N+++LW++V  +     A A  GK PVI++ +             P+
Sbjct: 61  FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115

Query: 435 QPVIVXXXXXXXXXXXXXXDVGGACVLSA 521
           +P++V                GGA +L+A
Sbjct: 116 RPIVVKAKLISKVAEKKIKAAGGAVLLTA 144


>12_02_0407 - 18654134-18654172,18654913-18655803
          Length = 309

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 897 GAQKXNPLXPGVGRFLXQEKPPNLPPDLKHKMXAIVVVXL 778
           G  +   + P  G  L    PP LPP  +H+   +VV  L
Sbjct: 117 GTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,296,325
Number of Sequences: 37544
Number of extensions: 394197
Number of successful extensions: 1031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)