Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_E16
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 161 7e-40
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 144 8e-35
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 75 8e-14
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 30 2.9
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 3.8
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 6.6
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 6.6
03_02_0488 - 8824980-8825267,8825364-8827775 29 6.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 161 bits (391), Expect = 7e-40
Identities = 87/174 (50%), Positives = 122/174 (70%), Gaps = 3/174 (1%)
Frame = +2
Query: 83 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 256
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 257 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 436
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 437 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKXNRQLLNIKW-TPSSLYTR 595
+D ILED+V+PAEIVGKRIR +LDG+++IK+ LD R K T S++Y R
Sbjct: 123 HDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRR 176
Score = 37.1 bits (82), Expect = 0.019
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +1
Query: 544 QQTTIEHKVDTFQSVYKKLTGREVTFEFP 630
++ E+K++TF +VY++L G++V FE+P
Sbjct: 159 ERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 144 bits (349), Expect = 8e-35
Identities = 80/156 (51%), Positives = 108/156 (69%), Gaps = 3/156 (1%)
Frame = +2
Query: 137 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 310
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 311 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 490
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 491 IRVKLDGSQLIKVHLDKXNRQLLNIKW-TPSSLYTR 595
+R LDG +++K+ LD R K T SS+Y R
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRR 189
Score = 38.7 bits (86), Expect = 0.006
Identities = 13/29 (44%), Positives = 23/29 (79%)
Frame = +1
Query: 544 QQTTIEHKVDTFQSVYKKLTGREVTFEFP 630
++ E+K+DTF SVY++L G++V F++P
Sbjct: 172 ERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 74.9 bits (176), Expect = 8e-14
Identities = 42/98 (42%), Positives = 63/98 (64%)
Frame = +2
Query: 191 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 370
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 371 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 484
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +2
Query: 410 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKXNRQLLNIKWTPSSLY 589
P +RTLT+ +D IL+D + A+I GK + + + +IK + +L+ P +
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIKAGVISLLGKLVQYPERPGEPF 144
Query: 590 TR 595
R
Sbjct: 145 CR 146
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 405 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 289
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 143 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 277
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 143 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 277
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 92 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 268
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 269 KAFQKI 286
+ +++
Sbjct: 359 DSSEEL 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,465
Number of Sequences: 37544
Number of extensions: 332164
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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