Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_E15
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.22 
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    29   1.2  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    29   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   8.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 697 PPGKXPRALSCSRPCRLPDTCPPFLPSGSVXLSHXPP 807
           PP   P +L  S P  LP + PP LP G+      PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 799 YEKAPRFPKGGRGDRYPVNGRVGNRRXHEGAXQGGN 692
           Y K  +F  G    R P N R+G +R HE   +GGN
Sbjct: 21  YRKKRKFELG----RQPSNTRIGPKRIHEVRVRGGN 52


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 799 YEKAPRFPKGGRGDRYPVNGRVGNRRXHEGAXQGGN 692
           Y K  +F  G    R P N R+G +R HE   +GGN
Sbjct: 21  YRKKRKFELG----RQPSNTRIGPKRIHEVRVRGGN 52


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 689  GVSPLXSXLVXSPVPDPAVYRIPVPPSS 772
            GV P+       PVP P+V   PVPP S
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 677 IKIPGVSPLXSXLVXSPVPDPAVYRIPVPP 766
           +  P + P  +    +P P PAV   P PP
Sbjct: 718 VNSPAIKPQVTPAPPTPAPTPAVKHHPPPP 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,805
Number of Sequences: 5004
Number of extensions: 36618
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)