Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_E15
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0029 + 17345520-17345765,17345883-17346638 30 2.9
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 29 6.7
06_01_0145 + 1092764-1093351 29 6.7
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 29 6.7
03_06_0587 - 34921535-34922041,34922579-34922689 29 6.7
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 29 6.7
10_08_0922 - 21593030-21593225,21593319-21594142 24 7.9
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 28 8.8
05_03_0479 + 14529783-14530613 28 8.8
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 28 8.8
>01_05_0029 + 17345520-17345765,17345883-17346638
Length = 333
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 892 GAPVGLNGXLXXQPXXGXXDLNRXGKPTXGGYEKAPRFPKGGRGD 758
G P G G L+ G+ GY+ A P GGRGD
Sbjct: 223 GKPESFGGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGD 267
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 775 KGGRGDRYPVNGRVGNRRXHEGAXQGGNA 689
+GGRG P+ G+ R H G GG A
Sbjct: 33 RGGRGQEGPIAIAAGHGRGHRGGGHGGPA 61
>06_01_0145 + 1092764-1093351
Length = 195
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 775 KGGRGDRYPVNGRVGNRRXHEGAXQGGNA 689
+GGRG R GR+G R G GG A
Sbjct: 35 RGGRGGRGGAGGRLGVRHGRRGRRGGGGA 63
>04_04_0843 -
28619064-28619280,28619730-28619825,28620349-28620720,
28620849-28621161,28621183-28621393,28621478-28621681,
28622328-28622726
Length = 603
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 728 VPDPAVYRIPVP-PSSLREAW 787
VP P YR+PVP P SL + W
Sbjct: 115 VPPPRGYRVPVPWPESLHKIW 135
>03_06_0587 - 34921535-34922041,34922579-34922689
Length = 205
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/72 (33%), Positives = 27/72 (37%)
Frame = -3
Query: 898 DKGAPVGLNGXLXXQPXXGXXDLNRXGKPTXGGYEKAPRFPKGGRGDRYPVNGRVGNRRX 719
D+G G G + G D + GKP E P GGRGDRY G R
Sbjct: 107 DRGRDFG-GGGRAPRGSGGGGDCYKCGKPGHFARE-CPSGDGGGRGDRY------GGRDD 158
Query: 718 HEGAXQGGNAWY 683
G GG Y
Sbjct: 159 RYGGGGGGGGRY 170
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 693 FPPWXAPSCXLLFPTLPFTGYLSPLPPFGKRGAFSXPP 806
+PP P+ L P P+ Y P P G+ GA PP
Sbjct: 74 YPPPTTPAYSLPPPAQPYGQYPYPYPSQGQAGAAYWPP 111
>10_08_0922 - 21593030-21593225,21593319-21594142
Length = 339
Score = 23.8 bits (49), Expect(2) = 7.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 392 PRXLXDXLXQKKPPXPPP 339
PR + D L PP PPP
Sbjct: 172 PRDVLDALDGTPPPPPPP 189
Score = 23.0 bits (47), Expect(2) = 7.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 365 QKKPPXPPPXP 333
Q++PP PPP P
Sbjct: 228 QEQPPPPPPQP 238
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 844 GXXDLNRXGKPTXGGYEKAPRFPKGGRGDRYPVNGRVGNRRXHEGAXQGGN 692
G + GKP+ G E+ P + GD GR G R + G +G N
Sbjct: 1304 GWNQKSSWGKPSFSGGEQEPAWSNPKNGDDNSGYGRGGFGRGNRGRGRGRN 1354
>05_03_0479 + 14529783-14530613
Length = 276
Score = 28.3 bits (60), Expect = 8.8
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = +3
Query: 615 PPDXHXKNRXSXXRWRNPTGL*RYQAFPPWXAPSCXLLFPTLPFTGYLSPLPPFGKRGAF 794
PP+ N S + +PT + RY A APS L L G LS PP K F
Sbjct: 195 PPEEDRANDSSFNPFASPTSVLRYAAADEVTAPSFEHLLVEL---GDLSAPPPSTKAAEF 251
Query: 795 SXPP 806
P
Sbjct: 252 DWLP 255
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 826 RXGKPTXGGYEKAPRFPKGGRGDRYPVNGRVGNRRXHEGAXQGG 695
R G+ GY+ +P+GG G GR G R +GG
Sbjct: 4 RGGRDPRRGYDGGYGYPRGGGGQGGTNRGRDGQRGGGRNGPRGG 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,127,765
Number of Sequences: 37544
Number of extensions: 367255
Number of successful extensions: 1323
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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