Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_E15
(903 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 34 0.12
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 6.0
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 6.0
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PFG GA PP G P F S PF+P+GAP SG
Sbjct: 181 PPGPFGPSGA---PPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSG 224
Score = 34.3 bits (75), Expect = 0.12
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 732 PTLPFTGYLSPLPPFGKRGAFSX---PPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
PT PF +P P G G F+ PP G P F S PFNP+GAP SG
Sbjct: 211 PTGPFDPSGAP-PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 269
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PFNP+GAP SG
Sbjct: 406 PPGPFNPSGA---PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 449
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PFNP+GAP SG
Sbjct: 421 PPGPFNPSGA---PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 464
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PFNP+GAP SG
Sbjct: 436 PPGPFNPSGA---PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 479
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PFNP+GAP SG
Sbjct: 391 PPGPFDPSGA---PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 434
Score = 33.1 bits (72), Expect = 0.28
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PFNP+GAP SG
Sbjct: 316 PPGPFNPSGA---PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 359
Score = 33.1 bits (72), Expect = 0.28
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PFNP+GAP SG
Sbjct: 466 PPGPFNPSGA---PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 509
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PFNP+GAP SG
Sbjct: 286 PPGPFDPSGA---PPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSG 329
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PFNP+GAP SG
Sbjct: 376 PPGPFDPSGA---PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 419
Score = 32.3 bits (70), Expect = 0.49
Identities = 27/79 (34%), Positives = 30/79 (37%)
Frame = +3
Query: 666 PTGL*RYQAFPPWXAPSCXLLFPTLPFTGYLSPLPPFGKRGAFSXPPXVGFPXRFRSSXP 845
PTG PP P P +G P PF GA PP G P F S
Sbjct: 211 PTGPFDPSGAPPSGGPPGPFNPSGAPPSG--GPPGPFDPSGA---PPSGGPPGPFNPSGA 265
Query: 846 XXGWXXKXPFNPTGAPLSG 902
PF+P+GAP SG
Sbjct: 266 PPSGGPPGPFDPSGAPPSG 284
Score = 31.9 bits (69), Expect = 0.65
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PF+P+GAP SG
Sbjct: 451 PPGPFNPSGA---PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 494
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PF+P+GAP SG
Sbjct: 331 PPGPFDPSGA---PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 374
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PF+P+GAP SG
Sbjct: 481 PPGPFDPSGA---PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 524
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PF+P+GAP SG
Sbjct: 256 PPGPFNPSGA---PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 299
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PF+P+GAP SG
Sbjct: 346 PPGPFNPSGA---PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 389
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PF+P+GAP SG
Sbjct: 361 PPGPFDPSGA---PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 404
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/47 (40%), Positives = 20/47 (42%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA PP G P F S PF P+GAP SG
Sbjct: 151 PPGPFDPSGA---PPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSG 194
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 774 FGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
FGK + PP G P F S F+P+GAP SG
Sbjct: 137 FGKHHSTGAPPSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPSG 179
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +3
Query: 732 PTLPFTGYLSPLPPFGKRGAFSX---PPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF +P P G G F PP G P F S PFNP+ AP SG
Sbjct: 151 PPGPFDPSGAP-PSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSG 209
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +3
Query: 732 PTLPFTGYLSPLPPFGKRGAFSX---PPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF +P P G G F+ PP G F S PFNP+GAP SG
Sbjct: 181 PPGPFGPSGAP-PSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSG 239
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +3
Query: 762 PLPPFGKRGAFSXPPXVGFPXRFRSSXPXXGWXXKXPFNPTGAPLSG 902
P PF GA P G P F S PF+P+GAP SG
Sbjct: 301 PPGPFDPSGA---QPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 344
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 814 PTXGGYEKAPRFPKGG--RGDRYPVNGRVGNRRXHEGAXQGGNAWYLYSPVG 665
P GGY +AP+ P GG + P+ G G GA GG ++ P+G
Sbjct: 86 PIGGGYAQAPQAPIGGGYAAPQAPIGGGYG------GAPIGGGSYAGAGPIG 131
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Frame = -3
Query: 820 GKPTXGGYEKAPRFPKGG----RGDRYPVNGRVGNRRXHEGAXQGGNAWYLYSPVG 665
G P GGY AP+ P GG G Y G G A GG ++ P+G
Sbjct: 44 GAPAAGGYAVAPQAPIGGGYAQPGGGYGGAGGFGGAYQAAPAIGGGGSYAGAGPIG 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,757
Number of Sequences: 27780
Number of extensions: 249990
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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