Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_E13
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    30   2.8  
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274...    29   6.5  

>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 94  SVLFLVSRACSSLPCLPSVXRAAPTXAPLCXQAFG 198
           S L LV   CS +PC  S     P+ AP C Q+ G
Sbjct: 395 SNLSLVDPLCSIVPCSISFNEGPPSQAPECIQSKG 429


>01_06_0656 -
           30926858-30927040,30927141-30927281,30927373-30927489,
           30927696-30927784,30927870-30928010,30928084-30928171,
           30928280-30928342,30928544-30928699,30928778-30928870,
           30929095-30929176,30929426-30929493,30929575-30930633
          Length = 759

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 222 PLNSLSYNQAPQQCEAFIYGGCQGKRQSF 308
           PLN +SY    ++C   + GGC G   SF
Sbjct: 602 PLNYVSYASELEKCTKLVEGGCTGCPVSF 630


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,002
Number of Sequences: 37544
Number of extensions: 172023
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)