Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_E12
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 32 0.47
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 32 0.63
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 32 0.63
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 32 0.63
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 32 0.63
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 30 1.9
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 30 1.9
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 3.3
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 3.3
Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical p... 29 4.4
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 5.8
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 5.8
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 5.8
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 32.3 bits (70), Expect = 0.47
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 189 VSKAQFGPGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFTH 64
+S + GPG SG E P H+I+ T+Q IL +F H
Sbjct: 575 MSNEENGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNH 616
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 143 CPPDQYDPGPNCAFETICALRRAHSNRKHYCDCWCKPGLIRDSIAHKC 286
C D Y GPNC + +C A C CKPG + + C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 143 CPPDQYDPGPNCAFETICALRRAHSNRKHYCDCWCKPGLIRDSIAHKC 286
C D Y GPNC + +C A C CKPG + + C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 143 CPPDQYDPGPNCAFETICALRRAHSNRKHYCDCWCKPGLIRDSIAHKC 286
C D Y GPNC + +C A C CKPG + + C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 143 CPPDQYDPGPNCAFETICALRRAHSNRKHYCDCWCKPGLIRDSIAHKC 286
C D Y GPNC + +C A C CKPG + + C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 189 VSKAQFGPGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFTH 64
+S + GPG SG E P H+I+ T+Q IL + H
Sbjct: 575 MSNEENGPGPSGSGESMKERKPEHKILQVNTHQMIILLQLNH 616
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 239 CWCKPGLIRDSIAHKCVKE 295
C CK GL+RDS KCV++
Sbjct: 110 CQCKKGLVRDSATGKCVEK 128
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +2
Query: 134 SAECPPDQYDPGPNCAFETICALRRAHSNRKHYCDCWCKPGLIRDSIAHKCVKEC 298
S E P + G NC F CA + + C CKPG H C + C
Sbjct: 703 SCEKPCPHFTFGKNCRFPCKCARENSEGCDEITGKCRCKPGY----YGHHCKRMC 753
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +2
Query: 134 SAECPPDQYDPGPNCAFETICALRRAHSNRKHYCDCWCKPGLIRDSIAHKCVKEC 298
S E P + G NC F CA + + C CKPG H C + C
Sbjct: 703 SCEKPCPHFTFGKNCRFPCKCARENSEGCDEITGKCRCKPGY----YGHHCKRMC 753
>Z79756-10|CAL36507.1| 80|Caenorhabditis elegans Hypothetical
protein F53C11.9 protein.
Length = 80
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +2
Query: 239 CWCKPGLIRDSIAHKCV--KECPK 304
C CK G + DS KC+ K+CPK
Sbjct: 55 CECKQGFVVDSNTKKCIDLKKCPK 78
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Frame = +2
Query: 140 ECPPDQYDPGPNCAFETICALRRAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 283
ECP +P P C + L SN +Y C +C +C G D + K
Sbjct: 826 ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885
Query: 284 CVKEC 298
C+ EC
Sbjct: 886 CI-EC 889
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Frame = +2
Query: 140 ECPPDQYDPGPNCAFETICALRRAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 283
ECP +P P C + L SN +Y C +C +C G D + K
Sbjct: 826 ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885
Query: 284 CVKEC 298
C+ EC
Sbjct: 886 CI-EC 889
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Frame = +2
Query: 140 ECPPDQYDPGPNCAFETICALRRAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 283
ECP +P P C + L SN +Y C +C +C G D + K
Sbjct: 826 ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885
Query: 284 CVKEC 298
C+ EC
Sbjct: 886 CI-EC 889
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,959,376
Number of Sequences: 27780
Number of extensions: 317715
Number of successful extensions: 886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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