Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_E07
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    31   0.83 
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    31   0.83 
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    31   0.83 
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      31   0.83 
AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protei...    31   0.83 
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    31   1.4  
U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    31   1.4  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    31   1.4  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    31   1.4  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    30   2.5  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    30   2.5  
U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.        29   3.3  
Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical p...    29   4.4  
U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li...    29   5.8  

>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +2

Query: 137 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 280
           C  D Y  GPNC  + +C    A         C CKPG    + +  C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +2

Query: 137 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 280
           C  D Y  GPNC  + +C    A         C CKPG    + +  C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +2

Query: 137 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 280
           C  D Y  GPNC  + +C    A         C CKPG    + +  C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +2

Query: 137 CPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKC 280
           C  D Y  GPNC  + +C    A         C CKPG    + +  C
Sbjct: 416 CSKDSY--GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPC 461


>AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protein 3
           protein.
          Length = 777

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 183 VSKAQFGPGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFN 61
           +S  + GPG   SG    E  P H+I+   T+Q  IL +FN
Sbjct: 575 MSNEENGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFN 615


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
 Frame = +2

Query: 134  ECPPDQYDPGPNCAFETICALRSAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 277
            ECP    +P P C    +  L S  SN  +Y C +C          +C  G   D +  K
Sbjct: 826  ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885

Query: 278  CVKEC 292
            C+ EC
Sbjct: 886  CI-EC 889


>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 122 INSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCD-CWCKPGLIRDSIAHKCVKE 289
           I   EC  D+       A E  C   +   +     + C CK GL+RDS   KCV++
Sbjct: 72  IRKPECEGDEELKACGSACEPTCDNENPECDLVCMTNVCQCKKGLVRDSATGKCVEK 128


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
 Frame = +2

Query: 134  ECPPDQYDPGPNCAFETICALRSAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 277
            ECP    +P P C    +  L S  SN  +Y C +C          +C  G   D +  K
Sbjct: 826  ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885

Query: 278  CVKEC 292
            C+ EC
Sbjct: 886  CI-EC 889


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
 Frame = +2

Query: 134  ECPPDQYDPGPNCAFETICALRSAHSNRKHY-C-DC----------WCKPGLIRDSIAHK 277
            ECP    +P P C    +  L S  SN  +Y C +C          +C  G   D +  K
Sbjct: 826  ECPSLDLNPNPECISTELAVLGSVASNEDNYVCINCPLGYEGNKCEYCSDGFFEDPLTGK 885

Query: 278  CVKEC 292
            C+ EC
Sbjct: 886  CI-EC 889


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +2

Query: 128 SAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKEC 292
           S E P   +  G NC F   CA  ++    +    C CKPG       H C + C
Sbjct: 703 SCEKPCPHFTFGKNCRFPCKCARENSEGCDEITGKCRCKPGY----YGHHCKRMC 753


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +2

Query: 128 SAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKEC 292
           S E P   +  G NC F   CA  ++    +    C CKPG       H C + C
Sbjct: 703 SCEKPCPHFTFGKNCRFPCKCARENSEGCDEITGKCRCKPGY----YGHHCKRMC 753


>U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.
          Length = 780

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 183 VSKAQFGPGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFN 61
           +S  + GPG   SG    E  P H+I+   T+Q  IL + N
Sbjct: 575 MSNEENGPGPSGSGESMKERKPEHKILQVNTHQMIILLQLN 615


>Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical
           protein F53C11.9 protein.
          Length = 80

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 233 CWCKPGLIRDSIAHKCV--KECPK 298
           C CK G + DS   KC+  K+CPK
Sbjct: 55  CECKQGFVVDSNTKKCIDLKKCPK 78


>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical
           protein F31D5.5 protein.
          Length = 1788

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 120 ELTLRNVHRTN-TIRVQIAPSRQSVHYEAHTQTGN 221
           ELT +N H  N T+  +++  R   HYE  T TG+
Sbjct: 762 ELTNQNAHNDNFTVSTKMSCQRTICHYEVLTYTGS 796


>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
           protein MTH-1 protein.
          Length = 1757

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 120 ELTLRNVHRTN-TIRVQIAPSRQSVHYEAHTQTGN 221
           ELT +N H  N T+  +++  R   HYE  T TG+
Sbjct: 731 ELTNQNAHNDNFTVSTKMSCQRTICHYEVLTYTGS 765


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,247,391
Number of Sequences: 27780
Number of extensions: 294187
Number of successful extensions: 732
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)