Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_E05
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.9  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   6.7  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   8.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   8.9  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   8.9  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   8.9  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 266 NDCFTDEECLLSVNSLRQHHMRLAGFKDLGYSFV 367
           N  FTDE+  + V  LRQ ++ L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 315 DNIICVWLGSRTWAIHSWLEATEKFMKERVSSMTTISVKCNSDVL 449
           D ++  +L +R W + + LE   K +  R   M    + CN+D L
Sbjct: 124 DGLLLRFLRARKWNVEAALEMFMKTVHWRSREMNVGEIVCNADHL 168


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = +2

Query: 236 DLVVIQHTVSNDCFTDEE---CL----LSVNSLRQHHMR-LAGFKDLGYSFVAG 373
           +L ++ + + NDCFT  E   CL    LS N L +   +    F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -1

Query: 449  QNITIALNTDGCHRRHPLLHKFFRCL 372
            Q +T+ +  +GC++ +P+++   RC+
Sbjct: 1370 QKLTVPMRPEGCYQLNPVVNWLKRCI 1395


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 178 GNFAALGRCIQGXETHQEHQKXXETVQ-TKQLC--NLF 74
           GN    G+C+Q  ET     K   T++ T+ LC  NLF
Sbjct: 314 GNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLF 351


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 411 STTPAPS*IFPLPPATNE*PKSLNPARRI*CCRREFTLSKHSSSVKQSLDTVCCITTKSI 232
           S TP+ +   P P  +   P+  NP        +EF L K+  S+ Q    V  + T+S+
Sbjct: 414 SLTPSSTPSTPSPAESL--PQPSNPTSVYAKSLKEFWLDKYRLSILQKWPAVKSLPTESV 471

Query: 231 GL 226
           G+
Sbjct: 472 GI 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,176
Number of Sequences: 5004
Number of extensions: 37086
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)