Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_E01
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.65 
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    29   0.86 
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    29   1.1  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   4.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.1  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.1  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    26   8.1  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 124 HTNVTNNSSLSMTVALRLIPGRTKLTQNL 38
           HT +  NS L MT  L+ +PG  KL Q L
Sbjct: 353 HTALLTNSLLVMTTLLQAMPGSLKLQQEL 381


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 109 NNSSLSMTVALRLIPGRTKLTQNLKDS 29
           NNS+ S+T+  RL+PG   L+   +DS
Sbjct: 65  NNSAESVTIKFRLVPGELSLSPAAEDS 91


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -1

Query: 379 SVCVC*LLSLPSPKDFPYLFPWTVHRLQTRXKESSSITPRG 257
           S+ +C L +LP+P    Y++P T++ L     E+ ++T +G
Sbjct: 753 SIALCYLSTLPTPLLMRYIYP-TLYSLHDMPIEAGTVTEQG 792


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 559 LGGRTDSRTHKDSCQRRQN*PRHGRC 636
           L G+T  + H +SC  R++  RHG C
Sbjct: 49  LDGKTLEKQHCESCSIREDSSRHGIC 74


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 468 TRSPEQRICSEAKWTTLTSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTP 623
           +++ E+   +  K+T   + L R   +   +GR + ++ T R+LS +TK  P
Sbjct: 154 SKNAEEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNP 205


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 500 SEVDNINFSAPKNAADIINRWADEQTQG-HIKTPVSEDKIDPATAVAMFN 646
           + + NINF AP+   +I++   +EQ     +K   SE   +P   VA+ N
Sbjct: 578 TSISNINFEAPRYKTNIVHSLNNEQKYVLEVKNGTSEK--NPTRIVALEN 625


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 422 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKNAADIINRWA 565
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A KN +     WA
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA-KNYSS--KEWA 347


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 627 RPLQCLTSFSSRGHWHVPFNASE---TEEKDFTSMKKRSSRNRQ 749
           RPLQC+   S+ G   +P N  E   T   ++ S KK  SR RQ
Sbjct: 50  RPLQCVFICSTTGQGEMPLNMRERIITYRFNWAS-KKLDSRLRQ 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,631,322
Number of Sequences: 5004
Number of extensions: 75540
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)