Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_D20
(903 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 120 1e-27
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 120 1e-27
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 110 1e-24
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 110 1e-24
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 110 1e-24
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 110 1e-24
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 110 1e-24
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 76 4e-14
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 64 1e-10
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 45 6e-05
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 45 9e-05
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 39 0.004
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 38 0.010
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 35 0.069
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 35 0.069
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 34 0.12
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 33 0.21
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 33 0.21
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 32 0.65
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 31 1.5
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 4.5
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 29 4.5
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 29 4.5
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 4.5
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 29 4.5
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 29 6.0
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 120 bits (289), Expect = 1e-27
Identities = 60/135 (44%), Positives = 79/135 (58%)
Frame = +1
Query: 154 LEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXX 333
LEV + + +K KI+ EGIP +QRL +AG+QLED SD I E+T+++
Sbjct: 13 LEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELL 68
Query: 334 XXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAV 513
Y+TP LAVL++YK+DENGKI RLR+EC CG GVFMA
Sbjct: 69 GGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQ 128
Query: 514 MEDRHYCGKCHSTMV 558
+RHYCG+CH T+V
Sbjct: 129 HANRHYCGRCHDTLV 143
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 120 bits (289), Expect = 1e-27
Identities = 60/135 (44%), Positives = 79/135 (58%)
Frame = +1
Query: 154 LEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXX 333
LEV + + +K KI+ EGIP +QRL +AG+QLED SD I E+T+++
Sbjct: 13 LEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELL 68
Query: 334 XXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAV 513
Y+TP LAVL++YK+DENGKI RLR+EC CG GVFMA
Sbjct: 69 GGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQ 128
Query: 514 MEDRHYCGKCHSTMV 558
+RHYCG+CH T+V
Sbjct: 129 HANRHYCGRCHDTLV 143
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 89 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 165 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 241 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 317 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 393 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAG 252
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAG
Sbjct: 469 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 89 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 165 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 241 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 317 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 393 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 469 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 545 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 621 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 697 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 754
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 773 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 830
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 89 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 165 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 241 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 317 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 393 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 469 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 545 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 621 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 697 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 754
Score = 109 bits (262), Expect = 3e-24
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQK+STLHLV
Sbjct: 773 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKQSTLHLV 830
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 110 bits (265), Expect = 1e-24
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
ITLEVE S TIE VKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 75.8 bits (178), Expect = 4e-14
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
I L++EP+ +E +K K+++KEGIPP QQRLIFAGKQ+ D +T +DY + S LHLV
Sbjct: 13 IELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLV 70
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 64.5 bits (150), Expect = 1e-10
Identities = 28/58 (48%), Positives = 41/58 (70%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 321
I + ++ + T+E +K K+Q+K G+PP+QQRLIF QLE+ R L YNI+ E +HLV
Sbjct: 173 IPISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAYNIRDEDIIHLV 230
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 145 PITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 318
PIT VE S I+ + K+ + + P ++ +D RT+SDYNI+ STL L
Sbjct: 102 PIT--VEASDAIKDLNFKVAEAQRKPHQPSNIVLC----KDQRTISDYNIKNGSTLRL 153
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIP 222
ITLEVE S TIE VKAKIQDKEGIP
Sbjct: 13 ITLEVEASDTIENVKAKIQDKEGIP 37
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 44.8 bits (101), Expect = 9e-05
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +1
Query: 157 EVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 312
++ T+ +K I+ + IP + L F+GK+LED ++ DYNIQK ST+
Sbjct: 168 KIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNIQKSSTI 219
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = +1
Query: 154 LEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 318
L V S TI VK I + + R++ K LED TL+ YNIQ+ STL L
Sbjct: 187 LWVRGSDTIRQVKLTINSLANVDISSFRMVLRDKVLEDDHTLAYYNIQEGSTLGL 241
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 37.9 bits (84), Expect = 0.010
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 151 TLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLE---DGRTLSDYNIQKESTLHL 318
TL+ S T+ VKAKI +K I PN Q+L+ L+ D TL D + + STL L
Sbjct: 115 TLDTSASDTMASVKAKIWEKLRILPNTQKLLLENWDLDLFSDHSTLFDNSFENGSTLRL 173
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 35.1 bits (77), Expect = 0.069
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +1
Query: 154 LEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 312
L V S TI +K +I GI R K LED TL+ YNI++ ST+
Sbjct: 176 LRVCGSDTIRQIKPRINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 35.1 bits (77), Expect = 0.069
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 154 LEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 318
L V S TI +K +I + + R++ GK LED +L+ YNIQ+ + + L
Sbjct: 210 LRVCGSDTIRHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQEGALIWL 264
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 148 ITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDYNIQKESTL 312
I +E++ T+ +K +I+ + + N+Q L+F G +L+D +T++D I ++ +
Sbjct: 34 IVVEMKDKETVSILKNRIEQETEVLTNRQVLLFKGMELKDNNKTMTDCGINSDAKI 89
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 33.5 bits (73), Expect = 0.21
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +1
Query: 142 SPITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 318
S + ++ + + +K +IQD+ G+P +Q+L+ G ++D + + YN+ + ++L
Sbjct: 587 SIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIYL 645
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 33.5 bits (73), Expect = 0.21
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +1
Query: 142 SPITLEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 318
S + ++ + + +K +IQD+ G+P +Q+L+ G ++D + + YN+ + ++L
Sbjct: 587 SIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIYL 645
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 154 LEVEPSXTIEXVKAKIQDKEGIPPNQQRLIFAGK 255
LEV + + +K KI+ EGIP +QRL +A +
Sbjct: 13 LEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAAR 46
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 175 TIEXVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 288
++E +K KI+ + GIP + L GK L D + L+DY
Sbjct: 164 SVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADY 201
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1258 SRPGGAPLPSGVQEQQGILHIPRASDQ 1284
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1351 SRPGGAPLPSGVQEQQGILHIPRASDQ 1377
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1351 SRPGGAPLPSGVQEQQGILHIPRASDQ 1377
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1351 SRPGGAPLPSGVQEQQGILHIPRASDQ 1377
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1258 SRPGGAPLPSGVQEQQGILHIPRASDQ 1284
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1351 SRPGGAPLPSGVQEQQGILHIPRASDQ 1377
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1351 SRPGGAPLPSGVQEQQGILHIPRASDQ 1377
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1351 SRPGGAPLPSGVQEQQGILHIPRASDQ 1377
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -1
Query: 663 APTLCQDFI*NPSYTAVASVSYRLEG-----TYLFVVVFEDHRAVTLPAVVTVL 517
+P L Q + P Y VAS YR++G +Y+FV+ E+ + + P+V + L
Sbjct: 571 SPDLGQTWFNIPDY--VASTEYRIKGLKPSHSYMFVIRAENEKGIGTPSVSSAL 622
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -1
Query: 663 APTLCQDFI*NPSYTAVASVSYRLEG-----TYLFVVVFEDHRAVTLPAVVTVL 517
+P L Q + P Y VAS YR++G +Y+FV+ E+ + + P+V + L
Sbjct: 571 SPDLGQTWFNIPDY--VASTEYRIKGLKPSHSYMFVIRAENEKGIGTPSVSSAL 622
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 325 STPGGGWIPSGYCSPRGYVHLPAAFQQ 245
S PGG +PSG +G +H+P A Q
Sbjct: 1350 SRPGGAPLPSGVQEQQGILHIPRASDQ 1376
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -1
Query: 663 APTLCQDFI*NPSYTAVASVSYRLEG-----TYLFVVVFEDHRAVTLPAVVTVL 517
+P L Q + P Y VAS YR++G +Y+FV+ E+ + + P+V + L
Sbjct: 571 SPDLGQTWFNIPDY--VASTEYRIKGLKPSHSYMFVIRAENEKGIGTPSVSSAL 622
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 154 LEVEPSXTIEXVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDYNIQKESTLHL 318
+EV S I V+ K+ + + L + G++L+D R++ YNI + ++L
Sbjct: 100 VEVRNSYLIRYVRVKVANLLNNDLVESFNLYYGGQKLQDNRSIGSYNIDQSREIYL 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,371,728
Number of Sequences: 27780
Number of extensions: 240258
Number of successful extensions: 638
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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