Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_D19
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           35   0.075
03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.93 
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.1  
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305     30   2.8  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   6.6  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 35.1 bits (77), Expect = 0.075
 Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +1

Query: 145 AQVPRLGSWKTPTQLXSMXPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI- 321
           +Q P+ G     T L    P     QP     Y P  + P  V PP  Y P  +G  P  
Sbjct: 366 SQPPQSGMVNPSTPLPPAAPQ----QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPF 421

Query: 322 --DNGAYYVDRPQGRPYFKPTPFPGARG 399
              N + Y + P GRP   P P  GA G
Sbjct: 422 YGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 241 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 390
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = +1

Query: 178 PTQLXSMXPNPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVD 345
           P    +  P P+  QP  G  Y P      Y   P ++     P    Y P   G  Y  
Sbjct: 221 PPTSTTYPPQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPP 279

Query: 346 RPQGRPYFKPTPF 384
           +PQG+PY  P P+
Sbjct: 280 QPQGQPY-PPQPY 291


>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
          Length = 334

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 160 LGSWKTPTQLXSMXPNPFFAQPTVGNGYEPIDNRPYIVNPPKDY 291
           + S+  PT + SM P P    P +  GY P         PP +Y
Sbjct: 260 VSSYYAPTPVMSMQPTPMPPPPQMSYGYSPYPPMMMPPPPPPEY 303


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 217 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 384
           A+ T  +G  P ++  +   PP     D  P+ + Y+P  +  YY D P    Y+ P P 
Sbjct: 28  AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86

Query: 385 PGARGG 402
           P   GG
Sbjct: 87  PYYGGG 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,293,673
Number of Sequences: 37544
Number of extensions: 304172
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)