Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_D18
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609... 29 3.5
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 25 3.8
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 25 3.9
09_02_0327 - 7284829-7284889,7284946-7286126 24 5.4
05_04_0160 - 18624952-18625106,18625411-18625535,18625954-186260... 25 5.7
04_04_0009 + 22134160-22134696 25 5.9
06_03_1153 - 28047125-28047751 29 6.1
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 29 6.1
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 29 6.1
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 28 8.0
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 24 8.6
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 25 8.7
>07_03_1140 -
24258627-24258849,24259967-24260089,24260200-24260921,
24260945-24261073,24261484-24261714
Length = 475
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 669 GGGXPPPPPPXXG 707
GGG PPPPPP G
Sbjct: 56 GGGWPPPPPPLSG 68
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 24.6 bits (51), Expect(2) = 3.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 675 GXPPPPPPXXG 707
G PPPPPP G
Sbjct: 939 GGPPPPPPPPG 949
Score = 23.0 bits (47), Expect(2) = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 672 GGXPPPPPP 698
G PPPPPP
Sbjct: 927 GAPPPPPPP 935
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 24.6 bits (51), Expect(2) = 3.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 675 GXPPPPPPXXG 707
G PPPPPP G
Sbjct: 634 GGPPPPPPRPG 644
Score = 23.0 bits (47), Expect(2) = 3.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 672 GGXPPPPPP 698
G PPPPPP
Sbjct: 622 GAPPPPPPP 630
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 24.2 bits (50), Expect(2) = 5.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 681 PPPPPPXXGXXFF 719
PPPPPP G ++
Sbjct: 61 PPPPPPPRGRRYY 73
Score = 23.0 bits (47), Expect(2) = 5.4
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 672 GGXPPPPPP 698
G PPPPPP
Sbjct: 50 GAHPPPPPP 58
>05_04_0160 -
18624952-18625106,18625411-18625535,18625954-18626087,
18626221-18626298,18626456-18626561,18627739-18627836
Length = 231
Score = 25.4 bits (53), Expect(2) = 5.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 669 GGGXPPPPPP 698
GG PPPPPP
Sbjct: 8 GGATPPPPPP 17
Score = 24.2 bits (50), Expect(2) = 7.5
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -2
Query: 479 PXPPPPPPXFXXKXF 435
P PPPPPP F
Sbjct: 12 PPPPPPPPPLDASAF 26
Score = 22.6 bits (46), Expect(2) = 7.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 482 GPXPPPPPP 456
G PPPPPP
Sbjct: 9 GATPPPPPP 17
Score = 21.8 bits (44), Expect(2) = 5.7
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 681 PPPPPPXXGXXF 716
PPPPPP F
Sbjct: 15 PPPPPPLDASAF 26
>04_04_0009 + 22134160-22134696
Length = 178
Score = 25.0 bits (52), Expect(2) = 5.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 776 PPPPPXXKKKXXGGG 820
PPPPP K GGG
Sbjct: 65 PPPPPSSSGKSGGGG 79
Score = 22.2 bits (45), Expect(2) = 5.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 668 GGGXXPPPPP 697
GG PPPPP
Sbjct: 59 GGSTAPPPPP 68
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 477 PPPPPPPXFXXKXXFFFFXP 418
PPPPPPP F +F P
Sbjct: 22 PPPPPPPIFYSPPDVSYFSP 41
>04_01_0246 +
3225743-3226473,3226493-3226624,3227580-3227670,
3228617-3229074,3229342-3229864
Length = 644
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 477 PPPPPPPXFXXKXXF 433
PPPPPPP F K F
Sbjct: 38 PPPPPPPPFSFKFDF 52
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = -2
Query: 317 PKGVXFWGXGGPQXXGGXPKXXSPKKXGQKGVF-NWVTPPXLGXPPGXFXGXGPXTPXPT 141
P G P+ G P +P G +G F TPP L PG GP P P
Sbjct: 479 PGGTPVMQQQSPEQQGPTPSELTPGAFGGQGSFVEMPTPPVLIPVPGA-GPLGPFVPAPP 537
Query: 140 Q 138
+
Sbjct: 538 E 538
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
G PPPPPP K PPPPP
Sbjct: 214 GDQPPPPPPQADPSVELLVNFRHGLKVETNGLAPPPPPPP 253
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 24.2 bits (50), Expect(2) = 8.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 479 PXPPPPPPXFXXK 441
P PPPPPP K
Sbjct: 400 PTPPPPPPLLAPK 412
Score = 22.2 bits (45), Expect(2) = 8.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 482 GPXPPPPPP 456
GP PPPPP
Sbjct: 391 GPAVPPPPP 399
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 24.6 bits (51), Expect(2) = 8.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 681 PPPPPPXXGXXFFF 722
PPPPPP G F+
Sbjct: 104 PPPPPPPQGTLAFY 117
Score = 21.8 bits (44), Expect(2) = 8.7
Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 3/13 (23%)
Frame = +3
Query: 669 GGGX---PPPPPP 698
GGG PPPPPP
Sbjct: 94 GGGWVQLPPPPPP 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,777
Number of Sequences: 37544
Number of extensions: 463893
Number of successful extensions: 13880
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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