Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_D18
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 0.35
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 0.35
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 0.35
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.0
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 31 1.3
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 30 2.3
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 30 2.3
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 25 2.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 25 4.6
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 29 5.4
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 24 6.0
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 24 6.0
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 24 6.9
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 7.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 7.2
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 7.2
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 28 9.5
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 28 9.5
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 28 9.5
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect(2) = 0.35
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 675 GXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPPXXKK 803
G PPPPPP G PPPPP K+
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 358
Score = 22.6 bits (46), Expect(2) = 0.35
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 669 GGGXPPPPP 695
G G PPPPP
Sbjct: 272 GSGSPPPPP 280
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect(2) = 0.35
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 675 GXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPPXXKK 803
G PPPPPP G PPPPP K+
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 343
Score = 22.6 bits (46), Expect(2) = 0.35
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 669 GGGXPPPPP 695
G G PPPPP
Sbjct: 257 GSGSPPPPP 265
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect(2) = 0.35
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 675 GXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPPXXKK 803
G PPPPPP G PPPPP K+
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 337
Score = 22.6 bits (46), Expect(2) = 0.35
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 669 GGGXPPPPP 695
G G PPPPP
Sbjct: 251 GSGSPPPPP 259
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
GG PPPPPP G + P + PPPPP
Sbjct: 331 GGMPPPPPP--GMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
GG PPPPPP G + P + PPPPP
Sbjct: 341 GGMPPPPPP--GMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -2
Query: 296 GXGGPQXXGGXPKXXSPKKXGQKGVFNWVTPPXLGXPPGXFXGXG 162
G GP G P K G+ G PP G PPG G G
Sbjct: 195 GEAGPNGEPGAPGKDGEKGKGEPGPAGPPGPPGPGGPPGDAGGAG 239
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = -2
Query: 311 GVXFWGXGGPQXXGGXPKXXSPKKXGQKGVFNWVT--PPXLG------XPPGXFXG 168
G F G GGP GG P P + +G+FN T PP +G PPG G
Sbjct: 121 GSMFGGPGGP---GGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGG 173
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = -2
Query: 311 GVXFWGXGGPQXXGGXPKXXSPKKXGQKGVFNWVT--PPXLG------XPPGXFXG 168
G F G GGP GG P P + +G+FN T PP +G PPG G
Sbjct: 401 GSMFGGPGGP---GGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGG 453
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 25.4 bits (53), Expect(2) = 2.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 675 GXPPPPPPXXGXXFFF 722
G PPPPPP F F
Sbjct: 574 GGPPPPPPPPPPSFMF 589
Score = 23.8 bits (49), Expect(2) = 9.6
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 675 GXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
G PPPPPP K PPPPP
Sbjct: 549 GGPPPPPP---LPLDLLKGAVAGLKSVPGGPPPPPPPPP 584
Score = 22.6 bits (46), Expect(2) = 2.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 672 GGXPPPPP 695
GG PPPPP
Sbjct: 549 GGPPPPPP 556
Score = 22.2 bits (45), Expect(2) = 9.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 669 GGGXPPPPPP 698
G PPPPPP
Sbjct: 534 GAPTPPPPPP 543
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
GG PPPPPP G P PPPPP
Sbjct: 756 GGPPPPPPPPGGCP-----PPPPPPPPGGFKGGPPPPPPP 790
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
GG PPPPPP G P PPPPP
Sbjct: 724 GGPPPPPPP-GGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
GG PPPPPP G P PPPPP
Sbjct: 756 GGPPPPPPPPGGCP-----PPPPPPPPGGFKGGPPPPPPP 790
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
GG PPPPPP G P PPPPP
Sbjct: 724 GGPPPPPPP-GGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
GG PPPPPP G P PPPPP
Sbjct: 339 GGPPPPPPPPGGCP-----PPPPPPPPGGFKGGPPPPPPP 373
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 672 GGXPPPPPPXXGXXFFFFFXXXPXXKXXXXXXXXXPPPPP 791
GG PPPPPP G P PPPPP
Sbjct: 307 GGPPPPPPP-GGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 24.6 bits (51), Expect(2) = 4.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 675 GXPPPPPPXXG 707
G PPPPPP G
Sbjct: 112 GAPPPPPPPSG 122
Score = 22.6 bits (46), Expect(2) = 4.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 672 GGXPPPPP 695
GG PPPPP
Sbjct: 102 GGIPPPPP 109
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = -2
Query: 344 KTPPLFIFFPKGVXFWGXGGPQXXGGXPKXXSPKKXGQKGVFNWVTPPXLGXPP-GXFXG 168
+ PP FFP + WG P P P + W PP PP G
Sbjct: 23 RPPPPDWFFPGPLRPWGPPPPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPP 82
Query: 167 XGPXTPXPTQ 138
P P P Q
Sbjct: 83 PPPPEPEPQQ 92
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 24.2 bits (50), Expect(2) = 6.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 669 GGGXPPPPPP 698
GG PPPPPP
Sbjct: 670 GGFMPPPPPP 679
Score = 22.6 bits (46), Expect(2) = 6.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 681 PPPPPPXXG 707
PPPPPP G
Sbjct: 676 PPPPPPMPG 684
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 24.2 bits (50), Expect(2) = 6.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 669 GGGXPPPPPP 698
GG PPPPPP
Sbjct: 670 GGFMPPPPPP 679
Score = 22.6 bits (46), Expect(2) = 6.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 681 PPPPPPXXG 707
PPPPPP G
Sbjct: 676 PPPPPPMPG 684
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 24.2 bits (50), Expect(2) = 6.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 669 GGGXPPPPPP 698
G G PPPPPP
Sbjct: 62 GCGIPPPPPP 71
Score = 22.6 bits (46), Expect(2) = 6.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 681 PPPPPPXXG 707
PPPPPP G
Sbjct: 68 PPPPPPQCG 76
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -2
Query: 296 GXGGPQXXGGXPKXXSPKKXGQKGVFNWVTPPXLGXPPGXFXGXGPXTP 150
G GPQ G P P G G P PPG GP P
Sbjct: 200 GQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGP 248
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Frame = -2
Query: 290 GGPQXXGGXPKXXSPKKXGQKGVFNWVTPPXLGXPPGXFXGXG------PXTPXPT 141
GGP G +P G G FN P G PPG F G P P PT
Sbjct: 479 GGPP--GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGMPPVPLPT 532
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -2
Query: 296 GXGGPQXXGGXPKXXSPKKXGQKGVFNWVTPPXLGXPPGXFXGXGPXTP 150
G GPQ G P P G G P PPG GP P
Sbjct: 200 GQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGP 248
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 669 GGGXPPPPPP 698
GGG PPPPPP
Sbjct: 32 GGGCPPPPPP 41
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -3
Query: 286 GPKXXGGPQKXFPQKKXXKRGFLIGLPRPNWGGPXGXXLGXGRXPPXQPSPAXXIKGG 113
G + GGPQ+ Q++ + G+ G +GG G G G QP +GG
Sbjct: 805 GGRDGGGPQRYHDQQQQRQGGYQGGGYGGGYGGGGGGGGGGGGGSYHQPYNQDQRRGG 862
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = -2
Query: 290 GGPQXXGGXPKXXSPKKXGQKGVFNWVTPPXLGXPPGXFXGXGPXTP 150
GGP GG P G G TP LG P G GP TP
Sbjct: 31 GGPGTPGGPGTPGGPGTPGGPG-----TPGGLGTPGGPGTPGGPGTP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,373
Number of Sequences: 27780
Number of extensions: 257238
Number of successful extensions: 4057
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2678
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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