Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_D16
(1011 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 37 0.029
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 36 0.039
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 3.4
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 30 3.4
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 5.9
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 36.7 bits (81), Expect = 0.029
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +3
Query: 510 PPXXPXPPXXDDIXPXVXFXEXGARHNTPXXXXPXXXXXXPXPXXPXPPDSPXXXPXPP 686
PP P PP + P E + P P P P PP P P PP
Sbjct: 88 PPVPPCPPNATHVVPCHEDDELSGERHCPPRPPPPPPPHPPEDPPPHPPHPPDHPPPPP 146
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 36.3 bits (80), Expect = 0.039
Identities = 28/123 (22%), Positives = 30/123 (24%), Gaps = 1/123 (0%)
Frame = +3
Query: 594 PXXXXPXXXXXXPXPXXPXPPDSPXXXPXPPXRXXXNXXEPXPLXXXL-SXXXXGXXRXX 770
P P P P PP P P P + P P L +
Sbjct: 547 PPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPP 606
Query: 771 DPXPXXXXXXXXPXGAPXXPXXNXPXXXXXPPPXXXAXXXXREXXPPPXXHXXRXXXXXP 950
P P P P P N PPP R PPP P
Sbjct: 607 PPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPP 666
Query: 951 PLP 959
P P
Sbjct: 667 PPP 669
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.1 bits (67), Expect = 1.5
Identities = 23/95 (24%), Positives = 24/95 (25%)
Frame = +3
Query: 630 PXPXXPXPPDSPXXXPXPPXRXXXNXXEPXPLXXXLSXXXXGXXRXXDPXPXXXXXXXXP 809
P P P PP P P PP + P P G P P P
Sbjct: 277 PPPAGPPPPAPP---PLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAP 333
Query: 810 XGAPXXPXXNXPXXXXXPPPXXXAXXXXREXXPPP 914
P PPP A R P P
Sbjct: 334 PPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGP 368
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.9 bits (64), Expect = 3.4
Identities = 22/84 (26%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Frame = +3
Query: 480 QXAXXXQXRXPPXXPXPPXXD-DIXPXVXFXEXGAR--HNTPXXXXPXXXXXXPXPXXPX 650
+ A Q PP PP D P E ++P P P P
Sbjct: 1113 EQALADQNELPPLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPP 1172
Query: 651 PPDSPXXXPXPPXRXXXNXXEPXP 722
PP SP P PP + P P
Sbjct: 1173 PPLSPSLPPPPPPPPLPSGPPPQP 1196
Score = 29.5 bits (63), Expect = 4.5
Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Frame = +3
Query: 510 PPXXPX--PPXXDDIXPXVXFXEXGARHNTPXXXXPXXXXXXPXPXXPXPPDSPXXXPXP 683
PP P PP D P TP P P P P P P P P
Sbjct: 1139 PPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAP 1198
Query: 684 P 686
P
Sbjct: 1199 P 1199
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/70 (25%), Positives = 21/70 (30%)
Frame = +3
Query: 513 PXXPXPPXXDDIXPXVXFXEXGARHNTPXXXXPXXXXXXPXPXXPXPPDSPXXXPXPPXR 692
P P P P F G+ +T P P P PP P P PP
Sbjct: 307 PPAPPPARSRRTPPRTRF-STGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPPPPP 365
Query: 693 XXXNXXEPXP 722
+P P
Sbjct: 366 KLNTAPKPPP 375
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.1 bits (62), Expect = 5.9
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +3
Query: 576 GARHNTPXXXXPXXXXXXPXPXXPXPPDSPXXXPXPP 686
G + N P P P P PP P P PP
Sbjct: 338 GTQENNATSDAPKLMPPPPPPPPPPPPPPPPPPPRPP 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,479,340
Number of Sequences: 37544
Number of extensions: 170148
Number of successful extensions: 821
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2975543960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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