Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_D12
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           36   0.035
07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.7  
01_03_0308 - 14883728-14884120                                         29   7.0  
12_02_1188 + 26801833-26802225                                         28   9.2  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.2  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 36.3 bits (80), Expect = 0.035
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 724 RKRHASRREKGGQVSGKRQXRNRRAHEGAFQGETPG 617
           R R   RR  GG+V+G+   R+RR   GA++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 541 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSXPAAYRIP 687
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>01_03_0308 - 14883728-14884120
          Length = 130

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 600 DRTIKIPGVSPWKAPSCALLFRX---CRLPDTCPPFSLREAWR 719
           +R  +I G    + PS A L+R    C    +CPP    E WR
Sbjct: 65  ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 694 GGQVSGKRQXRNRRAHEGAFQGETPGIFIVLSG 596
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,497,721
Number of Sequences: 37544
Number of extensions: 487332
Number of successful extensions: 1285
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)