Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_D05
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...   229   4e-61
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    50   3e-07
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    33   0.072
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   4.8  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   6.3  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   6.3  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    26   8.3  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   8.3  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score =  229 bits (560), Expect = 4e-61
 Identities = 113/216 (52%), Positives = 149/216 (68%), Gaps = 1/216 (0%)
 Frame = +2

Query: 245 LEELFAKFN-APAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGS 421
           L +L+A F       E+ GR RDW VDL+PKFLMANG L  +LI+T VTRY+EFK I GS
Sbjct: 48  LTQLYALFRPGEQRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGS 107

Query: 422 YVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANM 601
           YVY+ G+I+KVP ++ EAL S LM +FEKRR + FL +V +++E+D  T+KD +    +M
Sbjct: 108 YVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSM 167

Query: 602 QSLYDKFGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAXXXXXXXXXXX 781
           +S++ KFGL   TQDF GHA+ALYLDD YL++PA +T  RI LY+ S+A           
Sbjct: 168 ESVFKKFGLQSGTQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPL 227

Query: 782 XXXXXXXQGFARLSAIYGGTYILDKPIN*IVLGKDG 889
                  QGFARLSAIYGGTY+L++P++ IV G DG
Sbjct: 228 YGLGELPQGFARLSAIYGGTYMLNQPVDEIVYGDDG 263



 Score = 85.8 bits (203), Expect = 7e-18
 Identities = 38/46 (82%), Positives = 42/46 (91%)
 Frame = +1

Query: 100 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 237
           MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+
Sbjct: 1   MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASL 46


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +1

Query: 112 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 240
           YDVI++GT L+  ILS  LS + ++VLHID N +YG    S+T
Sbjct: 7   YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLT 49



 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 1/180 (0%)
 Frame = +2

Query: 329 PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKI-SKVPVDQKEALASDLMGMFE 505
           P+ + A+  LVKLL  T + +YL  K      +    +   KVP  + +   +  + +  
Sbjct: 104 PQEIFASSELVKLLSETKIYKYLLLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLAS 163

Query: 506 KRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDN 685
           KR    F+ +V +  +E  +       S    + L + F L    ++   + L   L  +
Sbjct: 164 KRIVMRFMKFVSNIADEQNQNLVKEWESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKD 223

Query: 686 YLQQPAIQTIRRIKLYSDSLAXXXXXXXXXXXXXXXXXXQGFARLSAIYGGTYILDKPIN 865
              + A+ T+  +K +                       QGF R SA+ GGT++L + I+
Sbjct: 224 IPTKDALDTV--LKYFHSFGMYGDYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAID 281


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 106 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 207
           ++ D+I++G G+  C L   L   G+KVL ++R+
Sbjct: 4   QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 245 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 337
           L  L  K  A AP +TY   + W    +PKF
Sbjct: 32  LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 521 NFLIYVQDFQEEDAKTWKDFDPSTANM 601
           N LIY+ + Q     TWKD+DP++  M
Sbjct: 22  NELIYIDEEQ-----TWKDYDPNSLKM 43


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 167 CRFLGRRFCTSIAISTTVVNLRQL 238
           CR L R+F  ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 275 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 385
           P P +  G  + + V     F++ANG L+K LIH  +
Sbjct: 14  PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = -3

Query: 502 KHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQ 323
           K +HK+ ++S FL D +  DF+ F+ I   D +  Q   + R   +F   S   + +R++
Sbjct: 378 KFSHKMLKRSQFLNDHFDADFN-FIQI-DHDPITNQ---ETRKPVKF---SKPTKDIRSR 429

Query: 322 V-NVPVSTSTVCFIRCRCVELSEQLL 248
           +  VP ST     IR   ++L E+ L
Sbjct: 430 LKEVPTSTDEEFIIRQELMDLLEKCL 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,818,484
Number of Sequences: 5004
Number of extensions: 82290
Number of successful extensions: 234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)