Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_D02
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.082
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.11 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.082
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 509 PPPPPPXGXXXXXPPPP 559
           PPPPPP G     PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 510 PPPPPXXGGXXXXPPPP 560
           PPPPP   G    PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 488 PXXXXXXPPPPPPXGXXXXXPPPP 559
           P      PPPPPP       PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 511 PPPPPXGXXXXXXPPPP 561
           PPPPP G      PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 510 PPPPPXXGGXXXXPPPP 560
           PPP P  GG    PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
           PP      PPPPP   G     PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 511 PPPPPXGXXXXXXPPPP 561
           PPPPP        PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 510 PPPPPXXGGXXXXPPPP 560
           PPPP   G     PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 511 PPPPPXGXXXXXXPPPP 561
           PPPPP        PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 509 PPPPPPXGXXXXX--PPPPXXXXXKKKK 586
           PPPPPP G       PPPP     KK+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 511 PPPPPXGXXXXXXPPPPXXXXKKKKK 588
           PPPPP G      PPPP      KK+
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPPXXXXKKKK 584
           PP      PPPP         PPPP    KK+K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 511 PPPPPXGXXXXXXPPPPXXXXKKKKK 588
           PPPPP        PPPP     KK+K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +3

Query: 486  PPXXXXXXPPP--PPXXGGXXXXPPPP 560
            PP      PPP  PP   G    PPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
           PP      PPPPP         PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 22.6 bits (46), Expect(2) = 8.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 515 PPPPXGXXXXXPPPP 559
           P PP G     PPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366



 Score = 21.0 bits (42), Expect(2) = 8.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 509 PPPPPP 526
           PPPPPP
Sbjct: 337 PPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,385
Number of Sequences: 5004
Number of extensions: 21189
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)