Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_D02
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.033
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.033
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.033
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 32 0.41
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 32 0.54
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.2
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 2.9
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 2.9
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 26 3.2
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 26 3.5
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.8
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 3.8
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 3.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 3.8
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 3.8
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 3.8
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 5.1
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 5.1
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 26 6.2
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 6.7
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 6.7
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 6.7
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/70 (32%), Positives = 23/70 (32%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPPPPPX 529
GGPP G PP GP PP P PPPPPP
Sbjct: 711 GGPPPPP-GLPP--ITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPG 766
Query: 530 GXXXXXPPPP 559
G PPPP
Sbjct: 767 GCPPPPPPPP 776
Score = 35.1 bits (77), Expect = 0.058
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP GG PPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPPPPPX 529
G PP G PP P PP P PPPPPP
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP------PPPPPPG 778
Query: 530 GXXXXXPPPP 559
G PPPP
Sbjct: 779 GFKGGPPPPP 788
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPPXXXXK 575
PP PPPPP G PPPP K
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +1
Query: 349 GGPPXXKKGGXPPFFXXGPXPXXXXXXXXXXXXXXXXXXXXFFFXXPXXXXXXXPPPPPX 528
G PP GG PP P P P PPPPP
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP------PGGCPPPPPPPPPG 778
Query: 529 GXXXXXXPPPP 561
G PPPP
Sbjct: 779 GFKGGPPPPPP 789
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPPXXXXK 576
PPPPP G PPPP K
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFK 781
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/70 (32%), Positives = 23/70 (32%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPPPPPX 529
GGPP G PP GP PP P PPPPPP
Sbjct: 711 GGPPPPP-GLPP--ITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPG 766
Query: 530 GXXXXXPPPP 559
G PPPP
Sbjct: 767 GCPPPPPPPP 776
Score = 35.1 bits (77), Expect = 0.058
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP GG PPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPPPPPX 529
G PP G PP P PP P PPPPPP
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP------PPPPPPG 778
Query: 530 GXXXXXPPPP 559
G PPPP
Sbjct: 779 GFKGGPPPPP 788
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPPXXXXK 575
PP PPPPP G PPPP K
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +1
Query: 349 GGPPXXKKGGXPPFFXXGPXPXXXXXXXXXXXXXXXXXXXXFFFXXPXXXXXXXPPPPPX 528
G PP GG PP P P P PPPPP
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP------PGGCPPPPPPPPPG 778
Query: 529 GXXXXXXPPPP 561
G PPPP
Sbjct: 779 GFKGGPPPPPP 789
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPPXXXXK 576
PPPPP G PPPP K
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFK 781
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/70 (32%), Positives = 23/70 (32%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPPPPPX 529
GGPP G PP GP PP P PPPPPP
Sbjct: 294 GGPPPPP-GLPP--ITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPG 349
Query: 530 GXXXXXPPPP 559
G PPPP
Sbjct: 350 GCPPPPPPPP 359
Score = 35.1 bits (77), Expect = 0.058
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP GG PPPP
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPPPPPX 529
G PP G PP P PP P PPPPPP
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP------PPPPPPG 361
Query: 530 GXXXXXPPPP 559
G PPPP
Sbjct: 362 GFKGGPPPPP 371
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPPXXXXK 575
PP PPPPP G PPPP K
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGFK 364
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +1
Query: 349 GGPPXXKKGGXPPFFXXGPXPXXXXXXXXXXXXXXXXXXXXFFFXXPXXXXXXXPPPPPX 528
G PP GG PP P P P PPPPP
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP------PGGCPPPPPPPPPG 361
Query: 529 GXXXXXXPPPP 561
G PPPP
Sbjct: 362 GFKGGPPPPPP 372
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPPXXXXK 576
PPPPP G PPPP K
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFK 364
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 32.3 bits (70), Expect = 0.41
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPPP G PPPP
Sbjct: 538 PPPPPPVGMANGGPPPP 554
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPP 561
PPPPP G PPPP
Sbjct: 539 PPPPPVGMANGGPPPPP 555
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 32.3 bits (70), Expect = 0.41
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPPP G PPPP
Sbjct: 41 PPPPPPCGGGYEAPPPP 57
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 510 PPPPPXXGGXXXXPPPP 560
PPPPP GG PPPP
Sbjct: 42 PPPPPCGGGYEAPPPPP 58
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPP 561
PPPPP G PPPP
Sbjct: 42 PPPPPCGGGYEAPPPPP 58
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 510 PPPPPXXGGXXXXPPPP 560
PPPPP GG PPPP
Sbjct: 580 PPPPPMLGGPPPPPPPP 596
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +2
Query: 371 RGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPPPPPXGXXXXXP 550
R PPP P PP PPPPPP P
Sbjct: 532 RPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPP 591
Query: 551 PPP 559
PPP
Sbjct: 592 PPP 594
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPPP PPPP
Sbjct: 579 PPPPPPMLGGPPPPPPP 595
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPPXXXXXKKKK 586
PPPPPP PPPP ++ K
Sbjct: 479 PPPPPPENEPEEFPPPPPSISIRETK 504
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPPXXXXKKKKK 588
PPPPP PPPP ++ KK
Sbjct: 480 PPPPPENEPEEFPPPPPSISIRETKK 505
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 510 PPPPPXXGGXXXXPPPPXXXXKKKKK 587
PPPPP PPPP ++ KK
Sbjct: 480 PPPPPENEPEEFPPPPPSISIRETKK 505
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP GG PPPP
Sbjct: 87 PPMFAGGIPPPPPMMGG--IPPPPP 109
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPP 557
PP PPPPP G PPP
Sbjct: 76 PPPGPGGIPPPPPMFAGGIPPPPP 99
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPP 557
PP PPPPP G PPP
Sbjct: 97 PPPMMGGIPPPPPMFGAPPPPPPP 120
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP G P PP
Sbjct: 106 PPPPMFGAPPPPPPPSGLGVAPQPP 130
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/74 (28%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPP---- 517
G PP + G PPP P PP P PPP
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP--TGSLPPPQAGG 319
Query: 518 -PPPXGXXXXXPPP 556
PPP G PPP
Sbjct: 320 SPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/74 (28%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPP---- 517
G PP + G PPP P PP P PPP
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP--TGSLPPPQAGG 340
Query: 518 -PPPXGXXXXXPPP 556
PPP G PPP
Sbjct: 341 SPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/74 (28%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Frame = +2
Query: 350 GGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPP---- 517
G PP + G PPP P PP P PPP
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP--TGSLPPPQAGG 325
Query: 518 -PPPXGXXXXXPPP 556
PPP G PPP
Sbjct: 326 SPPPAGTGSPPPPP 339
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 488 PXXXXXXPPPPPPXGXXXXXPPPP 559
P PPPPPP PPPP
Sbjct: 1336 PSPPPPPPPPPPPSDDLTPVPPPP 1359
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 510 PPPPPXXGGXXXXPPPPXXXXKKKKK 587
PPPPP PPPP ++KK
Sbjct: 1377 PPPPPLFSPSMILPPPPPPLPSEEKK 1402
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPPXXXXKKKKK 588
PPPPP PPPP ++KK
Sbjct: 1377 PPPPPLFSPSMILPPPPPPLPSEEKK 1402
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 488 PXXXXXXPPPPPPXGXXXXXPPPP 559
P PPPPPP PPPP
Sbjct: 245 PPSPVCMPPPPPPCPMPIPCPPPP 268
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP PPPP
Sbjct: 245 PPSPVCMPPPPPPCPMPIPCPPPPP 269
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 488 PXXXXXXPPPPPPXGXXXXXPPPP 559
P PPPPPP PPPP
Sbjct: 57 PPPPMCPPPPPPPPPPMCPPPPPP 80
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 26.2 bits (55), Expect(2) = 3.2
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPPP PPP
Sbjct: 1015 PPPPPPADFFANIAPPP 1031
Score = 21.4 bits (43), Expect(2) = 3.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +2
Query: 488 PXXXXXXPPPPPP 526
P PPPPPP
Sbjct: 1006 PAGPGGPPPPPPP 1018
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 26.2 bits (55), Expect(2) = 3.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPPP PPP
Sbjct: 254 PPPPPPADFFANIAPPP 270
Score = 21.4 bits (43), Expect(2) = 3.5
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +2
Query: 488 PXXXXXXPPPPPP 526
P PPPPPP
Sbjct: 245 PAGPGGPPPPPPP 257
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 559 GGGGXXXXPPXXGGGGG 509
GGGG PP GGGGG
Sbjct: 267 GGGGYPQPPPQQGGGGG 283
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPP G PPPP
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPP 302
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPP G PPPP
Sbjct: 287 PPPPPSSGMWPPPPPPP 303
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPP P G PPPP
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPP 290
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP PPPP
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPP 351
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PP PP G PPPP
Sbjct: 267 PPSVTPMPPPMPPTPGMTPRPPPPP 291
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPP G PPPP
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPP 312
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPP G PPPP
Sbjct: 297 PPPPPSSGMWPPPPPPP 313
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPP P G PPPP
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPP 300
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP PPPP
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPP 361
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PP PP G PPPP
Sbjct: 277 PPSVTPMPPPMPPTPGMTPRPPPPP 301
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 488 PXXXXXXPPPPPPXGXXXXXPPPP 559
P PPPPP G PPPP
Sbjct: 34 PAAPACAPPPPPMCGCAPPPPPPP 57
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPP 561
PPPPP G PPPP
Sbjct: 680 PPPPPQGQQYYGGPPPP 696
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPP 561
PPPPP G PPPP
Sbjct: 680 PPPPPQGQQYYGGPPPP 696
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPPP PPPP
Sbjct: 85 PPPPPPPPPTLKAPPPP 101
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPPPPP PPPP
Sbjct: 86 PPPPPPPPTLKAPPPPP 102
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 511 PPPPPXGXXXXXXPPPP 561
PPPPP G PPPP
Sbjct: 49 PPPPPFGPVGYALPPPP 65
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 558 GGGGXXXXXPXGGGGGG 508
GGGG P GGGGGG
Sbjct: 622 GGGGGPPRGPGGGGGGG 638
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 558 GGGGXXXXXPXGGGGGG 508
GGGG P GGGGGG
Sbjct: 622 GGGGGPPRGPGGGGGGG 638
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 26.2 bits (55), Expect(2) = 6.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 512 PPPPPXGXXXXXPPPP 559
PPPPP PPPP
Sbjct: 72 PPPPPPPMPCPPPPPP 87
Score = 20.6 bits (41), Expect(2) = 6.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +2
Query: 356 PPXXKRGXPPPFFXXGPXPP 415
PP + PPP P PP
Sbjct: 58 PPCPAQFCPPPPICPPPPPP 77
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPP PP G PPPP
Sbjct: 236 PPPLPPVGAGAPPPPPP 252
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPP PP G PPPP
Sbjct: 222 PPPLPPVGAGAPPPPPP 238
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 509 PPPPPPXGXXXXXPPPP 559
PPP PP G PPPP
Sbjct: 222 PPPLPPVGAGAPPPPPP 238
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP PPPP
Sbjct: 787 PPSTSSVPPPPPPLPPISSGAPPPP 811
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 486 PPXXXXXXPPPPPXXGGXXXXPPPP 560
PP PPPPP PPPP
Sbjct: 787 PPSTSSVPPPPPPLPPISSGAPPPP 811
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/79 (25%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Frame = +2
Query: 335 RGNXXGGPPXXKRGXPPPFFXXGPXPPXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXP- 511
+G GGPP G PPP P P P P
Sbjct: 336 QGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPS 395
Query: 512 ---PPPPPXGXXXXXPPPP 559
P P G PPPP
Sbjct: 396 AFGAPQGPGGPGGYGPPPP 414
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,554,588
Number of Sequences: 27780
Number of extensions: 236649
Number of successful extensions: 3242
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1947
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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