Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C23
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   144   2e-35
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   8.9  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  144 bits (349), Expect = 2e-35
 Identities = 64/125 (51%), Positives = 86/125 (68%)
 Frame = +2

Query: 233 FAKQGFKLVGLKXVWPSEELLQQHYSDLASRPFFPGLXKYMSXGPVVPMVWEGLNVVKTG 412
           F  +G+KL  LK + PS +L+++HY++   +PF+  L  +M+ GPV  M+WEG   VKTG
Sbjct: 27  FELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGKQAVKTG 86

Query: 413 RQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVESAXKEIGLWFTDXEVVGWTPANE 592
           R MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+ESA +EI LWF   E+  +    E
Sbjct: 87  RLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKLWFQPSEIQVYDRTIE 146

Query: 593 NWVYE 607
            W+YE
Sbjct: 147 PWIYE 151


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 607 LINPVFICRCPAHNFXVRKPEAYFLXSRF 521
           +INPVF  R PAH     K +  F+ S F
Sbjct: 72  VINPVFDPRKPAHELKGNKRDNTFVTSLF 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,371
Number of Sequences: 5004
Number of extensions: 44276
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)