Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C23
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416...   164   1e-40
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406...   152   5e-37
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215...   149   2e-36
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835...   148   6e-36
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426...    29   4.1  

>05_07_0347 -
           29440541-29440664,29440908-29441020,29441522-29441689,
           29442341-29442391,29442518-29442555,29442885-29442978
          Length = 195

 Score =  164 bits (398), Expect = 1e-40
 Identities = 73/129 (56%), Positives = 93/129 (72%)
 Frame = +2

Query: 218 QXLXVFAKQGFKLVGLKXVWPSEELLQQHYSDLASRPFFPGLXKYMSXGPVVPMVWEGLN 397
           + L  F ++GFKLV +K V PS+E  Q+HY DL  RPFF GL  ++S GPV+ MVWEG  
Sbjct: 64  EILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFNGLCDFLSSGPVLAMVWEGEG 123

Query: 398 VVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVESAXKEIGLWFTDXEVVGW 577
           V+K GR+++GAT+P  S+PGTIRGDL + VGRNIIHGSD  E+A  EIGLWF   E+V +
Sbjct: 124 VIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKAEIGLWFEPRELVSY 183

Query: 578 TPANENWVY 604
           T   E W+Y
Sbjct: 184 TSNEEKWIY 192


>10_08_0945 -
           21738643-21738760,21740056-21740287,21740582-21740630,
           21740720-21740776
          Length = 151

 Score =  152 bits (368), Expect = 5e-37
 Identities = 69/139 (49%), Positives = 94/139 (67%)
 Frame = +2

Query: 191 GVQTWSCGHQXLXVFAKQGFKLVGLKXVWPSEELLQQHYSDLASRPFFPGLXKYMSXGPV 370
           GVQ    G + +  F K+GF L  +K +   +   ++HY+DL+S+PFF GL +Y+  GPV
Sbjct: 14  GVQRGLIG-EVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGLVEYIVSGPV 72

Query: 371 VPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVESAXKEIGLW 550
           V MVWEG  VV TGR+++GATNP  ++PGTIRGD  + +GRN+IHGSDSVE+A KEI LW
Sbjct: 73  VAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSVENARKEIALW 132

Query: 551 FTDXEVVGWTPANENWVYE 607
           F +  +  W      W+YE
Sbjct: 133 FPEG-IAEWRSNQHPWIYE 150


>12_02_0695 +
           22220054-22220056,22221226-22221276,22221415-22221501,
           22222064-22222144,22222241-22222353,22222482-22222531,
           22222790-22222857
          Length = 150

 Score =  149 bits (362), Expect = 2e-36
 Identities = 67/139 (48%), Positives = 92/139 (66%)
 Frame = +2

Query: 191 GVQTWSCGHQXLXVFAKQGFKLVGLKXVWPSEELLQQHYSDLASRPFFPGLXKYMSXGPV 370
           GVQ    G + +  F K+GF L GLK     ++L Q+HY DL  +PFFPGL +Y++ GPV
Sbjct: 13  GVQRGLVG-EIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGLIEYITSGPV 71

Query: 371 VPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVESAXKEIGLW 550
           V M WEG  VV + R+++GATNP  ++PGTIRGDL +Q GRN++HGSDS ++  +EI LW
Sbjct: 72  VCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALW 131

Query: 551 FTDXEVVGWTPANENWVYE 607
           F + E+  W      W+ E
Sbjct: 132 FKEGELCEWESVLTPWLVE 150


>07_03_0445 -
           18281715-18281832,18282274-18282505,18283486-18283534,
           18283733-18283783
          Length = 149

 Score =  148 bits (359), Expect = 6e-36
 Identities = 69/139 (49%), Positives = 92/139 (66%)
 Frame = +2

Query: 191 GVQTWSCGHQXLXVFAKQGFKLVGLKXVWPSEELLQQHYSDLASRPFFPGLXKYMSXGPV 370
           GVQ    G   +  F K+GF L G+K +       QQHY+DL+ +PFFPGL +Y+  GPV
Sbjct: 12  GVQRGLIG-DIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPV 70

Query: 371 VPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVESAXKEIGLW 550
           V MVWEG +VV TGR+++GAT P ++ PGTIR D  ++VGRN+IHGSDSV++  KEI LW
Sbjct: 71  VAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALW 130

Query: 551 FTDXEVVGWTPANENWVYE 607
           F +  +  W      W+YE
Sbjct: 131 FPEG-LAEWRSNLHPWIYE 148


>01_06_0319 -
           28441082-28441102,28441630-28441701,28442568-28442627,
           28442918-28443105,28444300-28444327,28444880-28444907,
           28444942-28445163,28445238-28445409,28446224-28447468,
           28447573-28447741,28447820-28448045,28449096-28449451,
           28449530-28449724,28450655-28450864,28451729-28452004
          Length = 1155

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -3

Query: 414 RPVFTTLRPSHTIGTTGPXLMYFXRPGKKGRDAKSL*CCWRS--SSDGHTXFKPTSLKPC 241
           RP       S+T  +  P      RPGK+G DA+S+     S  S    T  +P S KPC
Sbjct: 529 RPFCPCASRSNTDASLHPQTENGSRPGKRGNDAESVPGTNGSDLSQTDDTEARPCSKKPC 588


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,948,486
Number of Sequences: 37544
Number of extensions: 317566
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)