Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C22
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    28   1.5  
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    28   2.0  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   2.7  
SPBC713.08 |tom13||mitochondrial TOM complex subunit Tom13|Schiz...    27   4.7  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   4.7  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    27   4.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   4.7  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    26   6.2  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 592 GLIMFSHGSSREPRTNCKAILKRKXRLLFRIT*NWAEH 705
           GL    HG  R P T  KAI+KR+ RL+F    N ++H
Sbjct: 197 GLYYKIHGVHR-PVTMKKAIIKRRKRLVFNGNANESQH 233


>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 677 FELPRTGPSTESSSYLKIFPKKTAP 751
           F++P  G +T  S  ++IFP +TAP
Sbjct: 71  FQVPFAGAATLKSILVRIFPNETAP 95


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 225 PGSVNSAPEAPYKEIQSRNNN---IVKTSDWYERCRSNGLAPH 106
           P SV +AP+   K+ + +  +   +  T+  Y  CRSNGL PH
Sbjct: 83  PNSV-AAPKVEEKKSKKKAKDEKPLTYTTGGYLYCRSNGLIPH 124


>SPBC713.08 |tom13||mitochondrial TOM complex subunit
           Tom13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 71

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -2

Query: 825 QVIYSRTIHHPEVACEEIGFELIRVGAVFFGKIFKYELLSVLGPVLGNSKEQSXLSFEY 649
           + ++S+ IH  + A   +G   +    + FG+IF +  +  LG   G+++  S    +Y
Sbjct: 10  KTLFSQVIHIFKYAAINLGLPFLNGVMLGFGEIFAHAFIHSLGWAPGHTRIYSIQRHQY 68


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 519 FFILSTDYDEYAIAYTCKTLKKKTRTHYVFTW 614
           FF+ STD  +Y   Y  +   KK   H+   W
Sbjct: 111 FFVTSTDVFKYLDEYERRVRSKKALGHFPVVW 142


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 697 AEHRKQFVFKDFSEEDCSYTDQFKTDFFTSNFWVMNGS*IN 819
           A+ ++ +VF DF   D + T Q   D+ T NF + N + +N
Sbjct: 2   AQKKQLYVFSDF---DGTITLQDSNDYLTDNFGMGNANRVN 39


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 771 RFLHKQLLGDEWFLNKLLDCD*IKNNCVFC 860
           R LH  ++ D W LN+ L+ + I++ C+FC
Sbjct: 837 RLLH--VVSDNWELNEGLEKETIQSICLFC 864


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 213 NSAPEAPYKEIQ-SRNNNIVKTSDWYERCRSNGLAPHAGNYP 91
           N+ P+  YK+ Q S    + + ++W +       APHA +YP
Sbjct: 99  NARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAPHASDYP 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,636,072
Number of Sequences: 5004
Number of extensions: 78923
Number of successful extensions: 223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)