Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C22
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    32   0.70 
10_08_0007 + 14044844-14045767                                         30   2.1  
03_06_0288 + 32865414-32867249                                         29   4.9  
03_05_0112 + 20955777-20956359,20956533-20957707                       28   8.6  

>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 432 PGKTSGFYYPRRHSRTSPVGCSQGCLPGSPGWHNRRLAVHRL 307
           P   +   +PR   R  P GCS G + G+    +RRL   RL
Sbjct: 179 PASAAAASHPRLRCRCEPRGCSSGRIEGAGAASDRRLRCRRL 220


>10_08_0007 + 14044844-14045767
          Length = 307

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 471 QFIVSHEGGDKVLQFPFFILSTDYDEYAIAYTCKTLKKKTRTHYVFTWILTRTKN---KL 641
           Q IV++ GG+ +  F     +T          C+TL+K+ + + +F W    +++   K 
Sbjct: 233 QQIVNYPGGNILASFTTAATTTSVPVETALSACRTLQKEGKLYGIFIWAADHSRSQGFKY 292

Query: 642 QGDTQKKVXTALSNY 686
           + ++Q  +  A  +Y
Sbjct: 293 ETESQALLANATISY 307


>03_06_0288 + 32865414-32867249
          Length = 611

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 605 FHMDPHENQEQTARRYSKESXDCSFELPRTGPST 706
           FH++  E ++ T+ RY  E    SF L  T P T
Sbjct: 527 FHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGT 560


>03_05_0112 + 20955777-20956359,20956533-20957707
          Length = 585

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +2

Query: 572 NVEEENQDSLCFHMDPHENQEQTARRYSKESXDCSFELPRTGPSTESSSYLKIFPKKT 745
           N++ E   S+CFH+    N+++    +   +  CS    + GP+ ++   +++ P KT
Sbjct: 464 NIDVETS-SICFHI----NEKEEKFEFQPRTEQCSMVRIKYGPNPQNIQEVEVEPPKT 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,413,297
Number of Sequences: 37544
Number of extensions: 519758
Number of successful extensions: 1334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)