Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C19
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    29   5.7  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    29   5.7  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    29   5.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   10.0 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   10.0 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   10.0 
AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    28   10.0 

>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 572 GGXGGFFXXKXTPPPXGXXFFFXAPPPXXPPKXP 673
           G  GG       PPP G   F   PPP  PP  P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFM--PPPPPPPPMP 683


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 572 GGXGGFFXXKXTPPPXGXXFFFXAPPPXXPPKXP 673
           G  GG       PPP G   F   PPP  PP  P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFM--PPPPPPPPMP 683


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 599 KXTPPPXGXXFFFXAPPP 652
           K  PPP    +FF APPP
Sbjct: 321 KPNPPPPSAGYFFQAPPP 338


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +3

Query: 738 PQXGGXXPXKNFF*XXPKXPPXXXGPLXGXFQKAPPPPGXXXKP 869
           P  GG  P        P  PP    P+ G     PPPPG    P
Sbjct: 730 PPPGGLPPITGG--PPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +3

Query: 738 PQXGGXXPXKNFF*XXPKXPPXXXGPLXGXFQKAPPPPGXXXKP 869
           P  GG  P        P  PP    P+ G     PPPPG    P
Sbjct: 730 PPPGGLPPITGG--PPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +3

Query: 738 PQXGGXXPXKNFF*XXPKXPPXXXGPLXGXFQKAPPPPGXXXKP 869
           P  GG  P        P  PP    P+ G     PPPPG    P
Sbjct: 313 PPPGGLPPITGG--PPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354


>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 727 LTPLGEEKNXPPPXXPPXG 671
           L PLG   N PPP  PP G
Sbjct: 318 LPPLGFNPNMPPPGMPPMG 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,460,634
Number of Sequences: 27780
Number of extensions: 127737
Number of successful extensions: 519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)