Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C18
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    33   0.33 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.1  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   9.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   9.4  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 825 PXXXGGGXPPXXXFFFXGGXXPPPXXGXXPPP 730
           P    GG PP    F  G   PPP  G  PPP
Sbjct: 76  PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 826 PXXXXGGXPPXXXFFFXXGXXXPPXXGXXPPPP 728
           P    GG PP    F       PP  G  PPPP
Sbjct: 76  PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPP 108


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 825 PXXXGGGXPPXXXFFFXGGXXPPPXXGXXPP 733
           P   GG  PP       GG  PPP  G  PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP 737


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 825 PXXXGGGXPPXXXFFFXGGXXPPPXXGXXPP 733
           P   GG  PP       GG  PPP  G  PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP 737


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 825 PXXXGGGXPPXXXFFFXGGXXPPPXXGXXPP 733
           P   GG  PP       GG  PPP  G  PP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPP 320


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 165   TNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDAN 61
             T+A  ++K + KFI+      GEF    +I+FD N
Sbjct: 12112 TSAPGEVKKKKKFIISAISQDGEFSDAESITFDEN 12146


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 165   TNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDAN 61
             T+A  ++K + KFI+      GEF    +I+FD N
Sbjct: 12112 TSAPGEVKKKKKFIISAISQDGEFSDAESITFDEN 12146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,253,907
Number of Sequences: 27780
Number of extensions: 216734
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)