Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C11
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.6  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   8.4  

>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 516 NNLIYLDNGSKRNRPFLRIIEQPQDYFRFRYASEMAG 626
           N ++YL+N S RN      I   +    FR  SE+AG
Sbjct: 669 NGVLYLENKSSRNARVRLAIADDEIKLAFRGDSELAG 705


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 313 RKEDI**SIN*VCKKNCIVVLKVSAKGIE*KCLQLPVIRIVILPADPHNLIIVIVH 480
           R ED   SIN + K + +++ K     +  + + +  I   IL  DP+NL +  +H
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,802
Number of Sequences: 5004
Number of extensions: 66070
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)