Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C11
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    50   3e-08
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     50   3e-08
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.8  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   3.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   5.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
 Frame = +3

Query: 543 SKRNRPFLRIIEQPQDY-FRFRYASEMAGTHGCLLGKSSSTNKNKVHPTVELVNYTGQAV 719
           ++R  P++ IIEQP     RFRY  E   + G + G +S T++NK  PT+++V Y G+A+
Sbjct: 40  TERLLPYVEIIEQPASKALRFRYECE-GRSAGSIPGVNS-TSENKTFPTIKIVGYKGRAL 97

Query: 720 IKCQLXQHKTP-EEHPHKLFEEE 785
           +         P   HPH L  +E
Sbjct: 98  VVVSCVTKDQPYRPHPHNLVGKE 120


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
 Frame = +3

Query: 543 SKRNRPFLRIIEQPQDY-FRFRYASEMAGTHGCLLGKSSSTNKNKVHPTVELVNYTGQAV 719
           ++R  P++ IIEQP     RFRY  E   + G + G +S T++NK  PT+++V Y G+A+
Sbjct: 40  TERLLPYVEIIEQPASKALRFRYECE-GRSAGSIPGVNS-TSENKTFPTIKIVGYKGRAL 97

Query: 720 IKCQLXQHKTP-EEHPHKLFEEE 785
           +         P   HPH L  +E
Sbjct: 98  VVVSCVTKDQPYRPHPHNLVGKE 120


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = -2

Query: 573 LCE-ETVCFSLSHCLDILGC 517
           LC  E  CF+L HC D   C
Sbjct: 736 LCRYEAHCFALCHCCDFDAC 755


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 326 ISSLRTQYEFSNENKQ*KKHFFRVCLF 246
           +S L++ YE ++E +  K   F  C+F
Sbjct: 34  LSDLKSMYESNSEEQMKKLGCFEACVF 60


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 528 ILGCSNLESTEVLVERVNNNYNKIV 454
           I GCS     + L + + +NYNK+V
Sbjct: 16  ISGCSGNPDAKRLYDDLLSNYNKLV 40


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 326 ISSLRTQYEFSNENKQ*KKHFFRVCLF 246
           +S L++ YE ++E +  K   F  C+F
Sbjct: 34  LSDLKSMYEANSEEQMKKFGCFEACVF 60


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 383 LTFNTTIQFFLQT*FMLYYISSLRTQYEFSNENKQ*KK 270
           L FN+ ++F   T  +   + S R +YEFS  +K  KK
Sbjct: 25  LYFNSLVRFRRFTIELDKVLESPRGKYEFSKYDKLKKK 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,483
Number of Sequences: 438
Number of extensions: 4861
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)