Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C10
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0028 + 27782072-27782171,27782427-27782620                       33   0.22 
11_08_0013 + 27629086-27629185,27629441-27629634                       33   0.22 
08_02_1156 - 24760332-24761530,24762757-24763648                       32   0.51 
08_02_0192 + 14048828-14048873,14048960-14051169                       29   3.6  
03_02_0141 + 5867591-5867736,5867926-5868010,5868096-5868137,586...    29   4.7  

>11_08_0028 + 27782072-27782171,27782427-27782620
          Length = 97

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 99  SILCFVSVLCTVHASVININIFDEGLNTNKTSIKLRNCDFMACDQLCRELGFPSGACDGE 278
           ++  F S++     +  + +    G     + + L NCD   C   C+  GF  G CDGE
Sbjct: 11  AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70

Query: 279 ---QCVCDNFLQT 308
               C C +  +T
Sbjct: 71  SNDHCCCTDEART 83


>11_08_0013 + 27629086-27629185,27629441-27629634
          Length = 97

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 99  SILCFVSVLCTVHASVININIFDEGLNTNKTSIKLRNCDFMACDQLCRELGFPSGACDGE 278
           ++  F S++     +  + +    G     + + L NCD   C   C+  GF  G CDGE
Sbjct: 11  AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70

Query: 279 ---QCVCDNFLQT 308
               C C +  +T
Sbjct: 71  SNDHCCCTDEART 83


>08_02_1156 - 24760332-24761530,24762757-24763648
          Length = 696

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +3

Query: 246 LGFPSGACDGEQCVCDNFLQTRGSHTITDHRLXQ 347
           LG  S  CDG+Q VCD +L TRG   ITD    Q
Sbjct: 652 LGTTSNRCDGDQIVCD-YLSTRG---ITDESTRQ 681


>08_02_0192 + 14048828-14048873,14048960-14051169
          Length = 751

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 644 HXPVSXNGFPGXVWVXPGQSKLQIFSPNQFTXSGIKNQLSPKNF 775
           H  +S NGF G VW  PG  +L+ F  N    +G   ++SP  F
Sbjct: 191 HVDLSWNGFTGMVW--PGIERLRQFKANNNNLTG---RISPGMF 229


>03_02_0141 +
           5867591-5867736,5867926-5868010,5868096-5868137,
           5868255-5868423,5868792-5868844,5869022-5869240,
           5869507-5869553,5869732-5869786
          Length = 271

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 283 HCSPSHAPLGNPSSRQSWSQAIKSQLRN 200
           H +PS +P  +P+S + W  A +  LRN
Sbjct: 11  HAAPSSSPSPSPASLRQWRPAAQRNLRN 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,146,281
Number of Sequences: 37544
Number of extensions: 467624
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)