Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C08
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    28   1.8  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   2.4  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    27   4.3  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    26   5.6  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    26   7.5  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   9.9  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 70  TECDATEDEAMMKEVESLSLRYEDLLTQAKKRELQINNLRLPHSASY 210
           TE D+ ED+    +  S S   E   +  KKR L + N  +PH  S+
Sbjct: 349 TENDSNEDDKEECQSSSTSSVPESTASTPKKRILHVQNDYVPHYRSF 395


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 254 SGQVSLPDSCSHVSAYDA 201
           S Q+SLPDS S+ S++DA
Sbjct: 98  SNQISLPDSHSYASSFDA 115


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 121 LSLRYEDLLTQAKKRELQINNLRLPHSAS 207
           + +  E LL Q  K+E Q+N    PH A+
Sbjct: 86  IGINAEKLLNQETKKEKQLNTANEPHEAN 114


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 40  FAKHLSELLLTECDATEDEAMMKEVESLSLRYEDLL 147
           FA+HLSE L+T   A    A+ K  + + L   D L
Sbjct: 300 FAQHLSEGLMTFSYAMPSSALAKPAQKMVLDQADFL 335


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = +1

Query: 7   FPPLTXRESLRFAKHLSELLLTECDATEDEAMMKEVESL----SLRYEDLLTQAKKRELQ 174
           +PP        F K +   + TE DA  D+A+ +  E L     LR +  +  ++KRE +
Sbjct: 82  YPPELKGYMRTFGKDVDYSITTEQDAAMDQAIQEAAEKLVVKMQLRRDLRMRLSRKREKK 141

Query: 175 INNLRLPHSASYALTCEHESGRLTXPLCSEXNWKQLDN 288
               +     S+ L    E+ ++T P  ++    QL N
Sbjct: 142 TEIEKHLERISF-LNKVPENWQVTLPETTDFLLDQLGN 178


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 58  ELLLTECDATEDEAMMKEVESLSLRYEDLLTQAKKRELQINNLRLPHS 201
           +LL   CD   D   +K   + + +YE +L+  +K   ++++L   +S
Sbjct: 551 DLLTKLCDEPTDTLSLKGKSNTTSKYEPILSYLEKLSPELDHLIFKYS 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,584
Number of Sequences: 5004
Number of extensions: 26055
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)