Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C08
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0879 + 8430683-8430839,8431523-8431824                           31   1.1  
04_04_0901 - 29247518-29247634,29248990-29250273                       29   5.9  
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422...    29   5.9  
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    28   7.8  
09_02_0294 - 7032860-7033091,7033471-7033622                           28   7.8  

>12_01_0879 + 8430683-8430839,8431523-8431824
          Length = 152

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 169 APSSWLASTGLRTATRETQLPSSWLRPQSRRTRSAA-APRGA 47
           +PSSW   T      RE +  SS LR   RRTR+ A AP  A
Sbjct: 4   SPSSWTNLTPASRGPREVEARSSRLRCACRRTRTGAIAPASA 45


>04_04_0901 - 29247518-29247634,29248990-29250273
          Length = 466

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -3

Query: 199 SGATSGC*FGAPSSWLASTGLRTATRETQLP--SSWLRPQSRRTRSAAAPR 53
           SG++ G  FG+PSS L+S  + TA+R   +P     L+ Q + T  A++P+
Sbjct: 104 SGSSMGGAFGSPSSTLSS--ITTASRAVAMPLMQPQLQRQQQVTYMASSPQ 152


>01_06_1655 +
           38940790-38940864,38941245-38942057,38942149-38942268,
           38942883-38943566
          Length = 563

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 139 LRTATRETQLPSSWLRPQSRRTRSAAAPRG 50
           L+   ++T+  + W RPQ++R R AA PRG
Sbjct: 171 LQQMQQQTRAETEWRRPQAQR-RRAARPRG 199


>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 169 APSSWLASTGLRTATRETQLPSSWLRPQSRRTRSAAAPRGAWQILR 32
           +P++W +S+  R +T    LPS+ L+  + R RSA    G+ Q+ R
Sbjct: 102 SPNAWGSSS--RPSTASGTLPSNHLQTTTNRPRSAETRPGSSQLSR 145


>09_02_0294 - 7032860-7033091,7033471-7033622
          Length = 127

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 139 LRTATRETQLPSSWLRPQSRRTRSAAAPRGAWQILRIP 26
           L + T E ++   W+ P+ R T      RG W+ L  P
Sbjct: 70  LESVTEEYEMKYVWMHPEQRYTLIRVKKRGYWEPLDDP 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,661
Number of Sequences: 37544
Number of extensions: 222098
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)