Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C08
         (825 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC100986-1|AAI00987.1|  471|Homo sapiens TRIM60 protein protein.       31   5.1  
BC100985-1|AAI00986.1|  471|Homo sapiens tripartite motif-contai...    31   5.1  
BC100984-1|AAI00985.1|  471|Homo sapiens tripartite motif-contai...    31   5.1  
BC100983-1|AAI00984.1|  471|Homo sapiens tripartite motif-contai...    31   5.1  
AK093201-1|BAC04093.1|  471|Homo sapiens protein ( Homo sapiens ...    31   5.1  

>BC100986-1|AAI00987.1|  471|Homo sapiens TRIM60 protein protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 28  ESLRFAKHLSELLLTECDATED-EAMMKEVESLSLRYE-DLLTQAKKRELQINNLRLPHS 201
           E +     L+E L+   D     + +++EVE  S++   +LLTQAK    +  NL+ P  
Sbjct: 208 EEMNILAKLNENLVELSDYVSTLKHLLREVEGKSVQSNLELLTQAKSMHHKYQNLKCPEL 267

Query: 202 ASYALT 219
            S+ LT
Sbjct: 268 FSFRLT 273


>BC100985-1|AAI00986.1|  471|Homo sapiens tripartite
           motif-containing 60 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 28  ESLRFAKHLSELLLTECDATED-EAMMKEVESLSLRYE-DLLTQAKKRELQINNLRLPHS 201
           E +     L+E L+   D     + +++EVE  S++   +LLTQAK    +  NL+ P  
Sbjct: 208 EEMNILAKLNENLVELSDYVSTLKHLLREVEGKSVQSNLELLTQAKSMHHKYQNLKCPEL 267

Query: 202 ASYALT 219
            S+ LT
Sbjct: 268 FSFRLT 273


>BC100984-1|AAI00985.1|  471|Homo sapiens tripartite
           motif-containing 60 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 28  ESLRFAKHLSELLLTECDATED-EAMMKEVESLSLRYE-DLLTQAKKRELQINNLRLPHS 201
           E +     L+E L+   D     + +++EVE  S++   +LLTQAK    +  NL+ P  
Sbjct: 208 EEMNILAKLNENLVELSDYVSTLKHLLREVEGKSVQSNLELLTQAKSMHHKYQNLKCPEL 267

Query: 202 ASYALT 219
            S+ LT
Sbjct: 268 FSFRLT 273


>BC100983-1|AAI00984.1|  471|Homo sapiens tripartite
           motif-containing 60 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 28  ESLRFAKHLSELLLTECDATED-EAMMKEVESLSLRYE-DLLTQAKKRELQINNLRLPHS 201
           E +     L+E L+   D     + +++EVE  S++   +LLTQAK    +  NL+ P  
Sbjct: 208 EEMNILAKLNENLVELSDYVSTLKHLLREVEGKSVQSNLELLTQAKSMHHKYQNLKCPEL 267

Query: 202 ASYALT 219
            S+ LT
Sbjct: 268 FSFRLT 273


>AK093201-1|BAC04093.1|  471|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35882 fis, clone TESTI2008884, weakly similar to
           ZINC-FINGER PROTEIN RFP. ).
          Length = 471

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 28  ESLRFAKHLSELLLTECDATED-EAMMKEVESLSLRYE-DLLTQAKKRELQINNLRLPHS 201
           E +     L+E L+   D     + +++EVE  S++   +LLTQAK    +  NL+ P  
Sbjct: 208 EEMNILAKLNENLVELSDYVSTLKHLLREVEGKSVQSNLELLTQAKSMHHKYQNLKCPEL 267

Query: 202 ASYALT 219
            S+ LT
Sbjct: 268 FSFRLT 273


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,754,711
Number of Sequences: 237096
Number of extensions: 1254947
Number of successful extensions: 3757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3756
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)