Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_C07
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 29 0.86
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 24 1.3
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 28 1.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 28 1.5
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 27 4.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.6
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 4.6
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 6.1
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 8.1
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 29.1 bits (62), Expect = 0.86
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 147 LENRRRVLQKVIVRILQRLS 206
LE+RRR+L+KVIVR R+S
Sbjct: 407 LESRRRILEKVIVRESHRMS 426
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 23.8 bits (49), Expect(2) = 1.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 406 TLEKSSALFVDERMIVQEKFQLDVQKTGVC 495
++ + FV+ R I E++QL +G C
Sbjct: 137 SIRDNGGTFVNLRSIFTEQYQLSASDSGAC 166
Score = 23.0 bits (47), Expect(2) = 1.3
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 490 VCGVKVLSFDDTISSAATINQYVNEVTHSTIEEIVIPSDLEGVIL 624
VC +L+ D S IN Y T + +++ D++ ++L
Sbjct: 199 VCSDVLLNDDSNCPSKKGINNYQYPRTDPCVIMVILSHDMQHILL 243
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 547 NQYVNEVTHSTIEEIVIPSDLEGVILVLIDALYFKGAWKTQFPY 678
+ Y+ E+ + ++ +I L+G I+ L +A YFKG Q+ Y
Sbjct: 442 DNYILEI-EAVVDHSIIEVYLQGGIMCLTNAYYFKGDEPLQYYY 484
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -3
Query: 611 SRSDGITISSMVEWVTSLTYWLMVAAEEIVSSKDRTLT----PQTPVFCTSNWNFSCTI- 447
SR + + + + TYW++ E ++K RT QT C S NFS +
Sbjct: 783 SRDSRSAVRNYINFSNCFTYWIINCILEKKNTKARTAVISFFIQTAYKCLSLQNFSTLMS 842
Query: 446 ILSSTNKAELF 414
I+S+ N A ++
Sbjct: 843 IVSALNSAPIY 853
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +1
Query: 163 AYFKRSLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIYQVARLHP 342
++F ++L+ S+ A + H ++ ++A+ + L D++LQEIY+ A++
Sbjct: 421 SFFVKTLHAISSSSAAESSIALALHMLV--INAFQSMEKLKILTFDDSLQEIYKEAQIQS 478
Query: 343 HKCFNN 360
+N
Sbjct: 479 GTFMSN 484
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.6
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -3
Query: 638 ASINTRITPSRSDGITISSMVEWVTSLTYWLMVAAEEIVSSKDRTLTPQT-PVFCTSNWN 462
+S ++ + S S ISS +S T + SS T T T +S+ +
Sbjct: 257 SSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316
Query: 461 FSCTIILSSTNKAELFSSVPTA 396
FS T+ SS + + FSS PT+
Sbjct: 317 FSSTLSSSSMSSSSSFSSSPTS 338
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 511 SFDDTISSAATINQYVNEVTHSTIEEI 591
S DD +SS I+ + N++TH T+ +
Sbjct: 430 SLDDHLSSKKPISYFSNKLTHQTLPNV 456
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 587 SSMVEWVTSLTYWLMVAAEEIVSSKDRTLTPQTPVFCTSNW 465
S+ VE+VTSLTY M I++ K + P TP W
Sbjct: 322 STTVEFVTSLTYPEM----RIINKKHQGFIPSTPAEFRECW 358
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 553 YVNEVTHSTIEEIVIPSDLEGVILVLIDALYFKGAWKTQFPYDDTEXSAFYNHQGNQ 723
Y+ + + + + S EGVI + I G W+++ A Y ++GNQ
Sbjct: 103 YITDASPESQNLFLSKSKEEGVIFLCIQIKKLLGKWESKLKIIKFNKLAKYVYEGNQ 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,710
Number of Sequences: 5004
Number of extensions: 67723
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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