Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C06
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0981 + 9931542-9931606,9931779-9933105                           32   0.55 
05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001     28   9.0  

>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 677 PPPPXXKXXGXKKNFFFFFXXXGXXPPPPPXF 582
           PPPP       ++N   FF      PPPPP F
Sbjct: 48  PPPPPNHIPTTERNTSVFFNTSTIPPPPPPHF 79


>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
          Length = 708

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +1

Query: 589 GGGGGXXPXXXKKKKKFFXXPXXFXXGGGGA 681
           G GGG  P   KKKKK           GGGA
Sbjct: 243 GSGGGSVPVSEKKKKKLSGAAVAAIAVGGGA 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,318
Number of Sequences: 37544
Number of extensions: 258918
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)