Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_C03
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    44   2e-05
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   6.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   8.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/46 (50%), Positives = 28/46 (60%)
 Frame = +3

Query: 516 FKELQFFTGESMDCDGMVXMMEYXDFDGTQIPIMMFFKHGLEEXXF 653
           FK+  F+ GESMD D MV +M Y + DG   P M+FFK GL    F
Sbjct: 125 FKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 165 DEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNP 281
           DE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NP
Sbjct: 11  DELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANP 49



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 380 DXKSYTLYLKDYMXKLVSKLEEXAPDQVEVFKTN 481
           D KSY  Y+K YM  + ++L+E  P++V VF+ N
Sbjct: 80  DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKN 113


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 356 SPWFRXMSTPL*TAESVPSSASSADRIKTL 267
           S W+  +STPL T  ++P    S+D I TL
Sbjct: 279 SCWWLILSTPLCTIVTLPVENHSSDAILTL 308


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 487 VHVCFKYFNLVRRX-LFQFGY*FXHIVFEV 401
           V V +KY+  V R  LF FGY   +  FE+
Sbjct: 684 VFVGYKYYEAVEREVLFPFGYGLSYTTFEL 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,643
Number of Sequences: 5004
Number of extensions: 42175
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)