Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_C02
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.23
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 31 0.93
05_01_0499 - 4166891-4166942,4167191-4167510 31 1.2
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 31 1.2
06_01_0931 + 7192519-7194075 31 1.6
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 31 1.6
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275... 30 2.8
08_02_1438 + 27108359-27108889 29 3.7
05_07_0359 - 29539294-29540832,29542366-29542518 29 4.9
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 4.9
10_01_0271 - 2881059-2881409 29 6.5
02_04_0470 - 23183925-23184743,23184929-23185153 29 6.5
02_02_0272 - 8452994-8453187,8453850-8454975 29 6.5
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.6
10_08_1048 - 22553676-22554866 28 8.6
07_03_0723 + 20954827-20954905,20954974-20956277 28 8.6
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166 28 8.6
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 28 8.6
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -3
Query: 385 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 269
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 305 VAVVEVGGP--DGAEHVLVVAGERDLQGGPGGSVRV 204
VA V GGP DGA+ V+ V L G P GS RV
Sbjct: 91 VAYVTTGGPIPDGADAVVQVEDTEQLAGAPDGSKRV 126
>05_01_0499 - 4166891-4166942,4167191-4167510
Length = 123
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -3
Query: 475 LIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAA 314
LI LALR LL N + PS SP+ + R P P + + ASP+ +A
Sbjct: 5 LIIVPLALRGASLLGNAVAAAVVPSSSPEQQQQQQRRPRPPPGSKNGASPSSSA 58
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 31.1 bits (67), Expect = 1.2
Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 10/133 (7%)
Frame = -2
Query: 539 VVHSAAQRVEVGRVGNGAGRVPDRERLGAXXXXXXXXXVDLACDAELLPEAGNAGPGQAQ 360
V + A R GR G G GR R R G +D E+LP A G
Sbjct: 33 VAPTVAGRRGRGRGGRGGGRATGRGRAGGRGRGVPVIDLDPDQPCEVLPGAAIGGVAAGG 92
Query: 359 PVPVYVVQSEPC---GGSAELVAVVEVGG-----PDGAE--HVLVVAGERDLQGGPGGSV 210
P + + ++ GGSAE + E G PD + H ER L G G V
Sbjct: 93 PHHIEELANKVVKMDGGSAEKIGGGEDDGNASPVPDKVQVGHSPQYKVERKLGKGGFGQV 152
Query: 209 RVHCEAAGLSPRT 171
V +G + RT
Sbjct: 153 YVGRRVSGGTDRT 165
>06_01_0931 + 7192519-7194075
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = -3
Query: 622 LPPAE*SFRLMTSECAALNDAPTFCLNM*STPPPSVLKLGALGMALGEFLIANALALRSW 443
+PP + R CAAL +P S+ PPS A ++ +ALR+
Sbjct: 50 VPPGQTFERACIQACAALAFSPPAVAADLSSLPPS---------ASSPLVLVPNVALRTA 100
Query: 442 LLLW-NKLTLPATPSCSPKPGMRVPVRLSPCP 350
+L W ++L+LP SP V RL P P
Sbjct: 101 ILNWCDRLSLPYPAPLSPDTARDVVRRLMPSP 132
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 285 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAGKVNL 428
A N+R + S AS +A + + HG+ + G P +G AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220
>07_01_0370 +
2749353-2749786,2749949-2750346,2750435-2750519,
2751200-2751314,2751538-2751591
Length = 361
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 317 SAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVHCEAAGLSP-RTCRH 162
+A L + V + G A V++ AG R GG GG V VH AA SP T RH
Sbjct: 3 AARLASTV-LAGRRRAASVVIAAGPR--YGGGGGGVHVHPWAAFPSPTATTRH 52
>08_02_1438 + 27108359-27108889
Length = 176
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 323 GGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRV 204
GG E V VE DGA +L V E+++ GG VRV
Sbjct: 79 GGVREAVRCVEYVDDDGAVLLLTVTTEKEVAVVDGGEVRV 118
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = -3
Query: 406 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 227
P KPG P R +P P S +S A AA +L +K + P+R +
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213
Query: 226 APEVPSEFTVKLPACLRARVGTCLP 152
P P + P L A+ G P
Sbjct: 214 GPGRPRKNAAATPLRLGAKRGPGRP 238
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 413 CDAELLPEAGNAGPGQAQPV 354
C A LLPE GN G GQ+ V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505
>10_01_0271 - 2881059-2881409
Length = 116
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -2
Query: 353 PVYVVQSEPCGGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVHCEAAGLSPR 174
P + Q C V+E G PD A VL A + GG GGS R +A +PR
Sbjct: 34 PQELHQHHACASWTTKTTVIETGPPDLAVAVLGTARCLAISGG-GGSPRRWLPSATTAPR 92
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 28.7 bits (61), Expect = 6.5
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Frame = -3
Query: 406 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAAL-----SLWRSLKSADPMALSTFLSLPVR 242
PS +PGMRV R SP +RA P +L S W P A ST S R
Sbjct: 159 PSLPAQPGMRVAHRWSPAK---ARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRR 215
Query: 241 GTFR-AAPEVPSEFTVKLPACLRARVGTCLPLA 146
R P S + + C RA + L A
Sbjct: 216 RHHRLVPPPAASPLSNRQRHCCRAAIAGALESA 248
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 370 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 239
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 373 PVRLSPCPFTLSRASPAEAA 314
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>10_08_1048 - 22553676-22554866
Length = 396
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 535 STPPPSVLKLGALGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 356
ST PP +L A E L+ A+R+ + N L P P P + + RL+P
Sbjct: 47 STAPPLLLPAAHQAQAQDEQLLRQLTAIRATVSQLNHLRSSTPPPPPPPPELLLYSRLAP 106
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 400 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 299
CSP P R+P+R + C +ASP + + WR
Sbjct: 62 CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93
>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
Length = 545
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 215 SVRVHCEAAGLSPRTCRHVST 153
S+R+HC A L+PR CR T
Sbjct: 401 SLRLHCPAPLLAPRKCRETCT 421
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -3
Query: 427 KLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 287
K + P+ + P P ++P P + +PA A+ WR+ K+
Sbjct: 59 KTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKA 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,630,336
Number of Sequences: 37544
Number of extensions: 481173
Number of successful extensions: 1777
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -