Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B19
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0558 + 4521616-4522296                                           30   2.8  
06_01_0216 - 1641914-1642381,1642471-1642725                           30   2.8  
05_03_0039 - 7621613-7622695                                           30   2.8  
05_03_0040 - 7646525-7647775                                           29   6.5  

>12_01_0558 + 4521616-4522296
          Length = 226

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 254 TLRPTCAXCLKSCHLGSGAALTAPRASTTREDEAQXXRTTXXXTEXARSAGAXKR 90
           T R   A    S  L + AA  APRA+++ +D+A          E A SA   +R
Sbjct: 36  TRRHLLASSASSLLLAAAAAAAAPRAASSEDDDAVTSYDPVTAAERAASASVSRR 90


>06_01_0216 - 1641914-1642381,1642471-1642725
          Length = 240

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 124 PKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
           PK  E P+  +G   +A     KE AK ER+P
Sbjct: 37  PKPEEAPKAEEGEEKKAEGEKEKEKAKKERKP 68


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -3

Query: 190 PRREPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPE-AXDANAKEGAKXERRPXXG 20
           P+ EP P  K + K       +PK    PE    H+PE   +   K   K +  P  G
Sbjct: 108 PKPEPKPEPKPEPKPYPEPKPKPKPEPKPEPKPEHKPEPKPEPEPKPYPKPKPEPKPG 165


>05_03_0040 - 7646525-7647775
          Length = 416

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -3

Query: 190 PRREPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
           P+ EP P  K + K   +   EPK    PE     +PE      K   K E +P
Sbjct: 260 PKPEPKPEPKPEPKPEPKPKPEPKPHPKPEPKPEPKPE-PKPEPKPEPKPEPKP 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,661,928
Number of Sequences: 37544
Number of extensions: 208713
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)