Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_B19
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031729-5|CAI19619.1| 1603|Homo sapiens AT hook, DNA binding mo... 36 0.26
AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase D... 33 1.4
AL121674-3|CAI21745.1| 373|Homo sapiens chromodomain helicase D... 31 4.2
AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase D... 31 4.2
AL031669-4|CAI22256.1| 373|Homo sapiens chromodomain helicase D... 31 4.2
AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase D... 31 4.2
AL031667-6|CAI42981.1| 373|Homo sapiens chromodomain helicase D... 31 4.2
AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase D... 31 4.2
AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens ... 31 4.2
BC047322-1|AAH47322.1| 386|Homo sapiens Similar to expressed se... 31 5.6
DQ013876-1|AAY26238.1| 432|Homo sapiens cAMP regulatory element... 30 9.8
AK001925-1|BAA91981.1| 432|Homo sapiens protein ( Homo sapiens ... 30 9.8
AB034205-1|BAA90542.1| 432|Homo sapiens cisplatin resistance-as... 30 9.8
>AL031729-5|CAI19619.1| 1603|Homo sapiens AT hook, DNA binding
motif, containing 1 protein.
Length = 1603
Score = 35.5 bits (78), Expect = 0.26
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 208 AQEQR*PRREPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDA 65
A R P PHAK++R EP+ R+ P+ +GH P A A
Sbjct: 174 ANSIRSPEERATPHAKSERPSHPLYEPEPEPRDSPQPGQGHSPGATAA 221
>AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 2713
Score = 33.1 bits (72), Expect = 1.4
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = -3
Query: 184 REPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
REP P KRK + EP+ E P+ AK H+ + K+GAK R+P
Sbjct: 112 REPKP----KRKREPKEPKEPRKAEEPKKAKEHK----EPKQKDGAKKARKP 155
>AL121674-3|CAI21745.1| 373|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 373
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 184 REPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
REP P KRK + EP+ + P+ AK H+ + K+GAK R+P
Sbjct: 149 REPKP----KRKREPKEPKEPRKAKEPKKAKEHK----EPKQKDGAKKARKP 192
>AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 184 REPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
REP P KRK + EP+ + P+ AK H+ + K+GAK R+P
Sbjct: 114 REPKP----KRKREPKEPKEPRKAKEPKKAKEHK----EPKQKDGAKKARKP 157
>AL031669-4|CAI22256.1| 373|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 373
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 184 REPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
REP P KRK + EP+ + P+ AK H+ + K+GAK R+P
Sbjct: 149 REPKP----KRKREPKEPKEPRKAKEPKKAKEHK----EPKQKDGAKKARKP 192
>AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 184 REPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
REP P KRK + EP+ + P+ AK H+ + K+GAK R+P
Sbjct: 114 REPKP----KRKREPKEPKEPRKAKEPKKAKEHK----EPKQKDGAKKARKP 157
>AL031667-6|CAI42981.1| 373|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 373
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 184 REPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
REP P KRK + EP+ + P+ AK H+ + K+GAK R+P
Sbjct: 149 REPKP----KRKREPKEPKEPRKAKEPKKAKEHK----EPKQKDGAKKARKP 192
>AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 184 REPAPHAKTKRKXXGRXAXEPKXREVPEXAKGHRPEAXDANAKEGAKXERRP 29
REP P KRK + EP+ + P+ AK H+ + K+GAK R+P
Sbjct: 114 REPKP----KRKREPKEPKEPRKAKEPKKAKEHK----EPKQKDGAKKARKP 157
>AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens
cDNA FLJ26336 fis, clone HRT02842. ).
Length = 236
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 431 ISIFTMSHYVMWFLDYISNI*HTTVIAFLRVTECIYYYIHILNYV 565
IS+FT +H + YI H + ++ + C+Y YIH+ Y+
Sbjct: 164 ISVFTCTHVYICVFIYICI--HVYIHIYICIHICVYSYIHMYTYI 206
>BC047322-1|AAH47322.1| 386|Homo sapiens Similar to expressed
sequence AI450757 protein.
Length = 386
Score = 31.1 bits (67), Expect = 5.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 192 DRAESQHHTRRRSAXXTDDXXXNRKXEKCRSXQKATDQKRATRTRKKE 49
+R+ S+ RRRS +R+ K RS + D+++ TR +KK+
Sbjct: 339 NRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKKKK 386
>DQ013876-1|AAY26238.1| 432|Homo sapiens cAMP regulatory element
associated protein 1 protein.
Length = 432
Score = 30.3 bits (65), Expect = 9.8
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 192 DRAESQHHTRRRSAXXTDDXXXNRKXEKCRSXQKATDQKRATRTRKKEQS-XKGGPXXGG 16
DR+E +H +R R + +RK K RS + +Q R ++ ++K S K G
Sbjct: 337 DRSERKHRSRSRDRRRSKS--RDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSG 394
Query: 15 SRE 7
SRE
Sbjct: 395 SRE 397
>AK001925-1|BAA91981.1| 432|Homo sapiens protein ( Homo sapiens
cDNA FLJ11063 fis, clone PLACE1004814, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 432
Score = 30.3 bits (65), Expect = 9.8
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 192 DRAESQHHTRRRSAXXTDDXXXNRKXEKCRSXQKATDQKRATRTRKKEQS-XKGGPXXGG 16
DR+E +H +R R + +RK K RS + +Q R ++ ++K S K G
Sbjct: 337 DRSERKHRSRSRDRRRSKS--RDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSG 394
Query: 15 SRE 7
SRE
Sbjct: 395 SRE 397
>AB034205-1|BAA90542.1| 432|Homo sapiens cisplatin
resistance-associated overexpressed protein protein.
Length = 432
Score = 30.3 bits (65), Expect = 9.8
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 192 DRAESQHHTRRRSAXXTDDXXXNRKXEKCRSXQKATDQKRATRTRKKEQS-XKGGPXXGG 16
DR+E +H +R R + +RK K RS + +Q R ++ ++K S K G
Sbjct: 337 DRSERKHRSRSRDRRRSKS--RDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSG 394
Query: 15 SRE 7
SRE
Sbjct: 395 SRE 397
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,810,323
Number of Sequences: 237096
Number of extensions: 1149053
Number of successful extensions: 3855
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3850
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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