Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B18
         (1217 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09980-1|CAA71102.1|  432|Homo sapiens HOXD3 protein.                  32   4.8  
D11117-1|BAA01891.1|  416|Homo sapiens homeodomain protein protein.    32   4.8  
BC008789-1|AAH08789.1|  432|Homo sapiens homeobox D3 protein.          32   4.8  
BC005124-1|AAH05124.1|  432|Homo sapiens homeobox D3 protein.          32   4.8  

>Y09980-1|CAA71102.1|  432|Homo sapiens HOXD3 protein.
          Length = 432

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 1062 GGGXGXPPPXXXXXKXKXXPPPPPP 1136
            GGG G  PP     +    PPPPPP
Sbjct: 100  GGGGGSQPPGLNSEQQPPQPPPPPP 124


>D11117-1|BAA01891.1|  416|Homo sapiens homeodomain protein protein.
          Length = 416

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 1062 GGGXGXPPPXXXXXKXKXXPPPPPP 1136
            GGG G  PP     +    PPPPPP
Sbjct: 84   GGGGGSQPPGLNSEQQPPQPPPPPP 108


>BC008789-1|AAH08789.1|  432|Homo sapiens homeobox D3 protein.
          Length = 432

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 1062 GGGXGXPPPXXXXXKXKXXPPPPPP 1136
            GGG G  PP     +    PPPPPP
Sbjct: 100  GGGGGSQPPGLNSEQQPPQPPPPPP 124


>BC005124-1|AAH05124.1|  432|Homo sapiens homeobox D3 protein.
          Length = 432

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 1062 GGGXGXPPPXXXXXKXKXXPPPPPP 1136
            GGG G  PP     +    PPPPPP
Sbjct: 100  GGGGGSQPPGLNSEQQPPQPPPPPP 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,058,762
Number of Sequences: 237096
Number of extensions: 1307855
Number of successful extensions: 10940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9008
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17229469990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)