Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B18
         (1217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   2.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   2.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   2.2  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    30   3.8  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    30   3.8  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    29   8.8  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    29   8.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP       K  PPPPPP
Sbjct: 766  GGCPPPPPPPPPGGFKGGPPPPPP 789



 Score = 29.1 bits (62), Expect = 6.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP          PPPPPP
Sbjct: 740  GGPPPPPPPGGLPPISGGPPPPPP 763



 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP          PPPPPP
Sbjct: 724  GGPPPPPPPGGLPPITGGPPPPPP 747


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP       K  PPPPPP
Sbjct: 766  GGCPPPPPPPPPGGFKGGPPPPPP 789



 Score = 29.1 bits (62), Expect = 6.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP          PPPPPP
Sbjct: 740  GGPPPPPPPGGLPPISGGPPPPPP 763



 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP          PPPPPP
Sbjct: 724  GGPPPPPPPGGLPPITGGPPPPPP 747


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP       K  PPPPPP
Sbjct: 349  GGCPPPPPPPPPGGFKGGPPPPPP 372



 Score = 29.1 bits (62), Expect = 6.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP          PPPPPP
Sbjct: 323  GGPPPPPPPGGLPPISGGPPPPPP 346



 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 1065 GGXGXPPPXXXXXKXKXXPPPPPP 1136
            GG   PPP          PPPPPP
Sbjct: 307  GGPPPPPPPGGLPPITGGPPPPPP 330


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical protein
            R144.4a protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 1080 PPPXXXXXKXKXXPPPPPPXXKK 1148
            PPP       K  PPPPPP  +K
Sbjct: 160  PPPPVSVPSSKPTPPPPPPAQQK 182


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical protein
            R144.4b protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 1080 PPPXXXXXKXKXXPPPPPPXXKK 1148
            PPP       K  PPPPPP  +K
Sbjct: 160  PPPPVSVPSSKPTPPPPPPAQQK 182


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
            protein Y113G7B.23 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +3

Query: 993  PPPXKKKXXXXXXXXFFFFFFXXGGGXGXPPPXXXXXKXKXXPPPPPP 1136
            PPP +++            +   GGG G PPP          PPP  P
Sbjct: 652  PPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYYGGPPPPGQP 699


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like protein
            protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +3

Query: 993  PPPXKKKXXXXXXXXFFFFFFXXGGGXGXPPPXXXXXKXKXXPPPPPP 1136
            PPP +++            +   GGG G PPP          PPP  P
Sbjct: 652  PPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYYGGPPPPGQP 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,700,590
Number of Sequences: 27780
Number of extensions: 170470
Number of successful extensions: 1170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)